Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 1.5e-209 732.6 376 100.0
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 1.9e-100 370.2 363 57.9
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 2.1e-91 340.1 377 53.3
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 9.4e-71 271.6 215 65.1
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 4.1e-66 256.1 360 40.8
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 4.1e-66 256.1 357 38.7
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 4.1e-66 256.1 360 39.2
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 4.1e-66 256.1 357 38.9
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 6.9e-66 255.4 360 41.4
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 9.1e-66 255.0 360 40.8
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 1.2e-65 254.6 360 40.6
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 1.5e-65 254.2 358 39.1
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 1.5e-65 254.2 360 40.8
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 2.0e-65 253.8 358 39.9
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 2.6e-65 253.4 360 40.3
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 3.4e-65 253.1 357 40.1
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 4.5e-65 252.7 360 40.6
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 4.5e-65 252.7 360 39.4
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 5.9e-65 252.3 360 40.8
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 5.9e-65 252.3 360 38.9
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 5.9e-65 252.3 357 38.7
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 7.7e-65 251.9 360 38.9
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.0e-64 251.5 358 39.7
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 1.0e-64 251.5 358 38.5
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 1.3e-64 251.1 357 38.1
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 1.3e-64 251.1 358 39.9
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 1.3e-64 251.1 357 39.8
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 1.3e-64 251.1 357 39.8
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 1.7e-64 250.8 370 38.6
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.2e-64 250.4 358 38.0
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.2e-64 250.4 358 37.7
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 2.9e-64 250.0 366 38.0
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 2.9e-64 250.0 357 38.9
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 2.9e-64 250.0 358 38.5
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 3.8e-64 249.6 378 39.2
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 3.8e-64 249.6 360 39.4
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 6.5e-64 248.8 362 40.3
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 6.5e-64 248.8 362 40.3
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 8.5e-64 248.4 357 38.7
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 1.1e-63 248.1 358 38.3
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 1.4e-63 247.7 363 40.5
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 1.4e-63 247.7 357 38.7
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 1.9e-63 247.3 370 40.3
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 1.9e-63 247.3 358 38.3
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 1.9e-63 247.3 360 37.2
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.9e-63 247.3 358 38.3
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 2.5e-63 246.9 358 38.0
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 2.5e-63 246.9 357 38.1
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.5e-63 246.9 357 39.5
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.5e-63 246.9 357 38.1
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 3.2e-63 246.5 358 38.0
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 3.2e-63 246.5 358 38.5
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 4.2e-63 246.1 358 38.0
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 5.5e-63 245.7 362 37.3
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 5.5e-63 245.7 358 38.5
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.2e-63 245.4 358 38.0
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 7.2e-63 245.4 358 38.0
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 7.2e-63 245.4 357 37.8
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 9.4e-63 245.0 361 40.2
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 9.4e-63 245.0 361 38.5
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 9.4e-63 245.0 360 37.2
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 9.4e-63 245.0 360 37.8
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 1.2e-62 244.6 357 37.8
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 1.2e-62 244.6 357 37.5
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 1.6e-62 244.2 366 37.4
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 1.6e-62 244.2 357 37.5
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 2.1e-62 243.8 362 37.0
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 2.1e-62 243.8 358 37.7
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 2.7e-62 243.4 371 39.6
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 3.6e-62 243.0 360 36.9
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 4.7e-62 242.7 370 39.5
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 6.1e-62 242.3 357 37.8
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 6.1e-62 242.3 357 37.8
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.1e-62 242.3 358 38.0
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 6.1e-62 242.3 361 38.8
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 7.9e-62 241.9 365 36.7
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 7.9e-62 241.9 357 38.4
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.0e-61 241.5 358 36.6
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.0e-61 241.5 364 36.8
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.0e-61 241.5 364 36.8
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.0e-61 241.5 358 38.0
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.0e-61 241.5 357 37.5
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 1.0e-61 241.5 366 38.3
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 1.0e-61 241.5 357 37.8
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.4e-61 241.1 361 38.0
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 1.4e-61 241.1 366 37.7
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 1.4e-61 241.1 358 37.2
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.4e-61 241.1 358 38.0
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 1.8e-61 240.7 377 37.9
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 2.3e-61 240.4 387 36.4
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 2.3e-61 240.4 387 36.4
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 2.3e-61 240.4 357 37.8
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 3.0e-61 240.0 323 39.6
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 3.9e-61 239.6 358 38.0
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 3.9e-61 239.6 359 37.6
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 6.7e-61 238.8 357 37.5
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 6.7e-61 238.8 373 38.3
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 6.7e-61 238.8 375 38.4
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 8.8e-61 238.4 372 36.0
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 8.8e-61 238.4 372 36.0
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 8.8e-61 238.4 357 39.5
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.1e-60 238.0 372 36.0
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 1.1e-60 238.0 358 36.9
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 1.5e-60 237.7 358 38.3
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 1.5e-60 237.7 359 38.2
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 2.0e-60 237.3 391 36.6
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 2.0e-60 237.3 358 36.3
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 2.6e-60 236.9 362 36.7
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 3.3e-60 236.5 358 36.3
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 4.4e-60 236.1 267 43.8
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 4.4e-60 236.1 388 35.3
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 4.4e-60 236.1 349 37.8
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 5.7e-60 235.7 358 36.6
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 7.4e-60 235.3 358 37.4
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 9.7e-60 235.0 358 39.1
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 9.7e-60 235.0 357 36.1
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 9.7e-60 235.0 364 36.0
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.3e-59 234.6 372 35.5
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 2.2e-59 233.8 368 36.7
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 2.8e-59 233.4 346 37.3
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 3.7e-59 233.0 388 35.6
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 4.8e-59 232.6 358 36.3
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 8.2e-59 231.9 357 35.3
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 3.1e-58 229.9 358 36.3
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 7.0e-58 228.8 358 36.0
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 9.1e-58 228.4 363 37.2
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.3e-56 224.6 254 43.3
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 8.5e-56 221.9 358 34.6
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 7.2e-55 218.8 359 35.4
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 2.3e-53 213.8 261 41.0
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 4.8e-51 206.1 395 31.9
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 1.4e-50 204.5 291 36.8
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.8e-50 204.1 340 35.0
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 4.1e-50 203.0 417 31.7
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 7.0e-50 202.2 347 35.4
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 2.0e-49 200.7 263 40.3
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 5.9e-49 199.1 346 34.1
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 2.9e-48 196.8 357 33.6
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 8.5e-48 195.3 350 33.7
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 3.6e-46 189.9 388 33.2
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 6.8e-45 185.7 351 33.9
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 1.5e-44 184.5 360 33.3
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.1e-42 178.3 366 31.4
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 4.5e-41 172.9 293 33.8
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 7.7e-41 172.2 358 28.2
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.1e-39 168.3 246 38.2
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 2.5e-39 167.2 291 31.3
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 1.4e-37 161.4 418 28.0
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 1.8e-37 161.0 358 30.7
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 7.5e-36 155.6 392 29.8
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 9.8e-36 155.2 216 38.4
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 3.6e-30 136.7 271 31.0
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 8.0e-30 135.6 267 31.5
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 1.5e-28 131.3 240 31.7
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 7.5e-28 129.0 240 30.8
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 9.2e-26 122.1 236 33.1
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.2e-25 121.7 116 50.0
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 2.0e-25 120.9 278 28.8
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 9.5e-23 112.1 268 29.9
BcaC01g03724 Brassica carinata HOM05D003871 ORTHO05D039068 1.8e-21 107.8 88 60.2
RcHm_v2.0_Chr1g0352651 Rosa chinensis HOM05D003871 ORTHO05D004621 1.2e-20 105.1 88 55.7
BraA03t13201Z Brassica rapa HOM05D000209 ORTHO05D000129 2.2e-19 100.9 96 54.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-19 100.5 96 54.2
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-14 84.3 78 48.7
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 4.0e-13 80.1 152 30.3
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 1.4e-10 71.6 161 34.8
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 1.9e-07 61.2 168 24.4
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 2.5e-07 60.8 238 23.9
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 5.6e-07 59.7 238 23.1
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 7.3e-07 59.3 238 23.5
ATR0681G172 Amborella trichopoda HOM05D003221 ORTHO05D004432 9.5e-07 58.9 238 23.5


User provided reference genes

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