Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 2.2e-235 818.5 409 100.0
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 1.2e-116 424.1 412 57.0
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 3.6e-116 422.5 412 56.1
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 3.9e-115 419.1 412 56.1
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 3.9e-115 419.1 412 55.8
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 5.2e-115 418.7 412 56.1
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 6.7e-115 418.3 412 55.8
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 1.1e-114 417.5 412 55.6
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 2.0e-114 416.8 412 55.6
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 2.0e-114 416.8 412 55.6
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 4.4e-114 415.6 410 55.6
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 5.7e-114 415.2 412 55.6
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 8.2e-113 411.4 407 55.5
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 1.4e-112 410.6 412 55.6
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 1.8e-112 410.2 410 55.6
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 2.4e-112 409.8 410 55.6
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 2.4e-112 409.8 412 55.1
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 9.1e-112 407.9 410 54.9
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 5.9e-111 405.2 407 55.5
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 1.1e-109 401.0 410 53.7
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 1.5e-109 400.6 412 52.4
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 1.9e-109 400.2 411 53.3
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 2.5e-109 399.8 413 53.8
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 5.5e-109 398.7 411 53.3
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 7.2e-109 398.3 408 54.4
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 9.4e-109 397.9 411 53.0
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 1.2e-108 397.5 410 53.2
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 1.2e-108 397.5 410 52.9
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.2e-108 397.5 411 53.0
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 1.2e-108 397.5 411 53.0
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.6e-108 397.1 411 53.0
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.6e-108 397.1 411 53.0
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.6e-108 397.1 411 52.8
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 2.7e-108 396.4 410 52.2
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 3.6e-108 396.0 411 53.3
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 4.7e-108 395.6 410 53.2
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 6.1e-108 395.2 411 52.3
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 6.1e-108 395.2 411 52.8
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 6.1e-108 395.2 411 52.3
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 6.1e-108 395.2 410 52.9
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 8.0e-108 394.8 411 52.3
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.0e-107 394.4 410 52.4
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 1.0e-107 394.4 411 52.1
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 1.0e-107 394.4 411 52.6
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 1.0e-107 394.4 410 53.2
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 1.0e-107 394.4 411 52.1
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 1.4e-107 394.0 410 52.9
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.4e-107 394.0 410 52.9
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 1.8e-107 393.7 410 52.9
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 2.3e-107 393.3 411 52.1
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 3.0e-107 392.9 411 52.1
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 3.0e-107 392.9 411 52.1
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 4.0e-107 392.5 410 52.4
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 4.0e-107 392.5 410 52.4
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 4.0e-107 392.5 410 51.7
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 4.0e-107 392.5 411 52.3
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 4.0e-107 392.5 411 52.3
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 4.0e-107 392.5 410 52.7
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 4.0e-107 392.5 411 52.1
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 4.0e-107 392.5 411 52.6
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 4.0e-107 392.5 410 52.2
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 4.0e-107 392.5 410 52.0
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 5.2e-107 392.1 410 52.0
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 5.2e-107 392.1 411 51.8
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 5.2e-107 392.1 410 52.7
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 6.8e-107 391.7 410 52.7
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 8.8e-107 391.3 411 51.8
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 8.8e-107 391.3 410 52.4
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 8.8e-107 391.3 410 52.0
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 8.8e-107 391.3 410 52.0
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 1.2e-106 391.0 410 52.0
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 1.2e-106 391.0 410 52.0
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 1.5e-106 390.6 410 52.0
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 1.5e-106 390.6 411 51.6
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 1.5e-106 390.6 410 52.0
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.0e-106 390.2 410 52.0
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 2.0e-106 390.2 411 52.1
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 2.0e-106 390.2 410 52.2
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 2.6e-106 389.8 407 52.1
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.6e-106 389.8 407 52.1
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.6e-106 389.8 407 52.1
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 3.4e-106 389.4 411 52.3
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 3.4e-106 389.4 411 51.3
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 3.4e-106 389.4 410 52.2
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 4.4e-106 389.0 410 51.7
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 4.4e-106 389.0 413 51.6
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 4.4e-106 389.0 410 52.0
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 4.4e-106 389.0 411 52.1
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 7.5e-106 388.3 409 51.8
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 7.5e-106 388.3 424 51.4
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 7.5e-106 388.3 410 51.5
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 9.7e-106 387.9 409 52.1
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 9.7e-106 387.9 410 51.7
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 1.3e-105 387.5 410 51.7
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 1.3e-105 387.5 410 51.2
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 1.3e-105 387.5 407 51.8
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 2.2e-105 386.7 406 52.0
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.2e-105 386.7 410 51.5
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 3.7e-105 386.0 410 51.0
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 3.7e-105 386.0 410 51.0
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 3.7e-105 386.0 410 51.7
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 3.7e-105 386.0 410 51.7
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 8.3e-105 384.8 411 51.3
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 8.3e-105 384.8 411 52.1
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 1.8e-104 383.6 411 50.9
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 2.4e-104 383.3 415 50.1
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 2.4e-104 383.3 416 51.2
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 5.3e-104 382.1 410 51.0
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 7.0e-104 381.7 406 50.5
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 7.0e-104 381.7 411 50.6
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 9.1e-104 381.3 410 52.0
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 1.2e-103 380.9 411 50.1
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.2e-103 380.9 410 51.2
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 1.6e-103 380.6 413 50.6
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 2.0e-103 380.2 411 50.9
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 1.0e-102 377.9 410 51.0
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 1.3e-102 377.5 409 50.6
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 8.5e-102 374.8 412 49.5
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.1e-101 374.4 406 51.0
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 2.5e-101 373.2 413 49.9
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 3.2e-101 372.9 406 50.7
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 2.1e-100 370.2 412 49.0
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 2.7e-100 369.8 412 49.0
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 2.7e-100 369.8 412 48.8
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.7e-100 369.8 449 47.2
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 3.6e-100 369.4 376 53.7
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 4.7e-100 369.0 379 53.6
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 5.2e-99 365.5 444 48.0
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 2.6e-98 363.2 410 50.7
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 5.7e-98 362.1 410 49.0
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 6.3e-97 358.6 377 51.2
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 2.7e-95 353.2 401 49.4
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 3.5e-95 352.8 486 43.6
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 4.5e-95 352.4 400 49.2
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.3e-94 350.9 352 55.1
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 6.6e-94 348.6 380 52.9
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 6.6e-94 348.6 396 48.7
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 1.2e-92 344.4 376 50.8
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 7.5e-90 335.1 379 49.6
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.3e-89 334.3 407 46.2
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 1.1e-88 331.3 410 44.6
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 4.3e-85 319.3 405 44.2
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 4.3e-85 319.3 420 45.2
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 2.3e-83 313.5 413 43.6
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 2.0e-82 310.5 373 46.9
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 1.2e-79 301.2 412 39.8
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 1.2e-79 301.2 406 44.6
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 1.6e-76 290.8 416 40.9
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 3.2e-72 276.6 308 49.4
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 5.1e-70 269.2 415 42.4
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 1.5e-69 267.7 368 45.1
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 5.6e-69 265.8 279 50.2
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.6e-68 264.2 411 42.1
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 1.1e-64 251.5 295 46.8
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.2e-63 248.1 253 53.4
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 4.3e-61 239.6 392 34.2
CDE04G0576 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 4.6e-55 219.5 211 57.3
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 1.4e-51 208.0 237 46.4
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 5.6e-45 186.0 209 46.4
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.2e-41 174.1 230 43.5
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 8.4e-41 172.2 232 40.9
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 8.4e-41 172.2 290 37.9
Psat7g060600 Pisum sativum HOM05D003843 ORTHO05D004646 1.6e-39 167.9 165 57.6
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.6e-39 166.4 179 48.6
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.9e-32 144.4 149 52.3
Oeu027218.1 Olea europaea HOM05D003843 ORTHO05D004646 9.6e-29 132.1 135 56.3
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 2.9e-25 120.6 192 35.4
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 4.2e-24 116.7 129 48.8
FAN22G0723 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.3e-22 111.7 108 56.5
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 8.7e-22 109.0 153 43.8
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 1.6e-20 104.8 267 29.6
CsaV3_4G017300 Cucumis sativus L. HOM05D000055 ORTHO05D000057 4.3e-13 80.1 75 60.0
EL10Ac1g01679 Beta vulgaris HOM05D003843 ORTHO05D004646 4.8e-12 76.6 73 54.8
MBI13_g30274_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 4.8e-12 76.6 75 57.3
FAN25G1295 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.2e-12 75.9 117 42.7
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 2.6e-10 70.9 339 24.2
AagrBONN_evm.TU.Sc2ySwM_228.1456 Anthoceros agrestis HOM05D000944 ORTHO05D003581 1.0e-09 68.9 175 28.6
PSO478G4939 Papaver somniferum HOM05D000944 ORTHO05D003581 2.9e-09 67.4 176 27.3
Peaxi162Scf00222g00025 Petunia axillaris HOM05D000944 ORTHO05D003581 4.2e-08 63.5 183 26.2


User provided reference genes

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