Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.8e-131 470.7 244 100.0
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 3.8e-121 438.3 244 92.2
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 8.1e-116 420.6 244 89.8
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.2e-113 412.5 244 87.7
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.6e-106 389.0 256 83.2
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-104 383.3 255 81.2
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 5.4e-104 381.3 255 80.0
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.0e-102 377.1 255 79.6
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 8.7e-102 374.0 255 78.4
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 2.5e-101 372.5 255 78.8
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 2.5e-101 372.5 255 78.8
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 3.3e-101 372.1 254 80.3
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 7.4e-101 370.9 255 79.2
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 7.4e-101 370.9 255 79.2
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 4.9e-97 358.2 243 80.2
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 6.0e-95 351.3 257 74.3
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 6.7e-94 347.8 241 78.0
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 7.4e-93 344.4 241 77.6
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 9.6e-93 344.0 241 78.0
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 4.3e-85 318.5 256 69.9
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 9.7e-85 317.4 259 68.3
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 1.4e-83 313.5 255 68.2
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 6.9e-83 311.2 255 68.2
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 1.5e-82 310.1 218 79.8
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 4.5e-82 308.5 259 68.0
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 5.9e-82 308.1 260 66.2
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 7.6e-82 307.8 259 67.6
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 3.8e-81 305.4 260 65.0
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 5.0e-81 305.1 259 67.6
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 6.5e-81 304.7 260 65.0
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 8.5e-81 304.3 260 64.6
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-80 303.5 260 64.6
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 2.4e-75 286.2 181 75.1
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 4.1e-75 285.4 181 75.1
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 4.1e-75 285.4 179 76.0
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.5e-74 283.5 199 69.3
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 4.5e-74 282.0 254 63.4
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.0e-73 280.8 237 61.2
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 6.5e-73 278.1 194 70.1
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.9e-72 276.6 187 71.7
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 7.2e-72 274.6 239 59.8
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 9.4e-72 274.2 189 70.9
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.6e-71 273.5 187 71.1
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.6e-71 273.5 228 61.8
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 2.7e-71 272.7 234 62.0
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 3.6e-71 272.3 181 71.8
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 6.1e-71 271.6 232 61.6
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 6.1e-71 271.6 195 68.7
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 3.0e-70 269.2 187 68.4
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 8.8e-70 267.7 237 59.5
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 1.1e-69 267.3 234 61.5
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 4.4e-69 265.4 231 59.7
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 5.7e-69 265.0 223 61.9
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.3e-68 263.8 188 69.1
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.3e-68 263.8 181 69.1
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.3e-68 263.8 232 60.3
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.3e-68 263.8 181 71.8
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.3e-68 263.8 178 70.2
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 1.7e-68 263.5 186 67.7
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 2.2e-68 263.1 178 70.8
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.2e-68 263.1 236 56.4
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 2.2e-68 263.1 187 70.6
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 4.8e-68 261.9 198 63.6
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 6.3e-68 261.5 186 66.7
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.1e-67 260.8 248 57.7
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.4e-67 260.4 211 63.0
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 3.1e-67 259.2 238 57.1
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 5.3e-67 258.5 257 59.9
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 7.0e-67 258.1 184 69.6
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 7.0e-67 258.1 208 63.0
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 2.0e-66 256.5 217 60.8
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 2.6e-66 256.1 193 65.3
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 3.4e-66 255.8 231 60.2
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 4.5e-66 255.4 166 72.9
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.5e-66 255.4 252 56.0
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 1.3e-65 253.8 186 66.1
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.7e-65 253.4 193 64.2
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.7e-65 253.4 210 61.9
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.7e-65 253.4 231 57.6
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.2e-65 253.1 242 58.7
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 3.8e-65 252.3 189 66.1
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.1e-64 250.8 181 67.4
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.4e-64 250.4 214 59.3
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 2.5e-64 249.6 188 66.0
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 2.5e-64 249.6 176 68.8
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 2.5e-64 249.6 230 57.0
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 9.4e-64 247.7 202 61.9
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 8.0e-63 244.6 226 54.4
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 6.7e-62 241.5 181 66.3
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 8.8e-62 241.1 208 62.0
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 8.8e-62 241.1 171 67.8
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 3.3e-61 239.2 187 64.2
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 3.3e-61 239.2 208 61.5
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 3.3e-61 239.2 212 61.3
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 3.3e-61 239.2 188 62.2
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 2.2e-60 236.5 188 61.2
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.1e-59 234.2 185 64.3
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 2.4e-59 233.0 188 60.1
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 3.1e-59 232.6 153 71.9
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 5.3e-59 231.9 191 58.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 7.0e-59 231.5 192 60.4
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.7e-57 226.9 209 58.9
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-57 226.5 210 64.8
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 5.0e-57 225.3 188 55.9
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 5.0e-57 225.3 191 58.6
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.1e-56 224.2 172 61.6
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 2.5e-56 223.0 210 61.9
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 3.2e-56 222.6 144 72.9
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 8.8e-54 214.5 204 63.7
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 8.8e-54 214.5 206 55.3
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 1.5e-53 213.8 181 57.5
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 3.3e-53 212.6 171 60.8
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 5.7e-53 211.8 200 62.0
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 3.1e-51 206.1 156 65.4
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 6.1e-47 191.8 132 71.2
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 2.4e-43 179.9 148 60.1
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.2e-42 177.6 130 66.2
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.2e-42 177.6 152 55.3
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 3.5e-42 176.0 138 64.5
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 3.5e-42 176.0 149 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 8.6e-41 171.4 171 51.5
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.2e-39 167.5 151 60.9
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 7.5e-37 158.3 95 76.8
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 5.6e-32 142.1 154 51.9
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 1.0e-30 137.9 84 73.8
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 6.2e-23 112.1 88 63.6
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 2.6e-21 106.7 133 48.1
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 7.8e-18 95.1 105 54.3
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 1.7e-12 77.4 50 68.0
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 1.7e-12 77.4 101 44.6
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 2.9e-12 76.6 152 29.6
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 2.4e-11 73.6 37 86.5
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 6.0e-10 68.9 115 47.0
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 6.0e-10 68.9 115 47.0
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 6.0e-10 68.9 115 47.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 6.8e-06 55.5 91 36.3


User provided reference genes

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