Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.1e-225 785.8 525 100.0
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 7.6e-196 687.6 525 90.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.7e-182 643.3 528 77.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.3e-174 614.8 526 77.9
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.9e-170 603.2 530 75.1
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 4.5e-164 582.0 559 71.6
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 3.2e-162 575.9 528 76.7
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.1e-161 573.2 529 73.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.0e-160 570.9 529 74.1
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 4.5e-156 555.4 543 70.9
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.4e-149 533.1 526 70.5
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.2e-126 456.8 591 62.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 3.7e-126 456.1 414 74.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.7e-102 377.5 560 62.1
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.1e-96 356.7 477 61.6
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.4e-95 353.2 551 54.1
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 9.6e-90 335.1 546 51.3
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 4.0e-88 329.7 555 54.1
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.0e-86 325.1 552 52.4
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.2e-86 323.9 364 61.8
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.1e-85 321.6 554 50.5
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 1.1e-85 321.6 552 48.7
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.4e-85 321.2 560 50.7
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.4e-85 321.2 551 51.4
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.4e-85 321.2 551 50.5
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 2.5e-85 320.5 542 51.3
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 3.2e-85 320.1 542 50.7
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 7.9e-84 315.5 554 53.8
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.3e-83 314.7 551 53.7
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-83 314.7 566 52.5
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.8e-83 314.3 561 50.6
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.3e-83 313.9 557 49.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.3e-83 313.9 550 52.0
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 3.0e-83 313.5 567 49.0
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 3.0e-83 313.5 545 52.1
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.1e-82 311.6 558 49.8
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.1e-82 311.6 544 51.8
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.5e-82 311.2 541 53.2
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.5e-82 310.5 555 59.3
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 5.7e-82 309.3 553 52.6
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 7.4e-82 308.9 560 48.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 9.6e-82 308.5 567 51.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-81 307.4 558 57.2
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.7e-81 306.6 566 52.1
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.4e-80 304.7 558 57.9
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.8e-80 304.3 539 46.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.8e-80 304.3 553 52.6
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.8e-80 304.3 566 51.9
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 6.9e-80 302.4 542 50.9
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 9.0e-80 302.0 554 49.6
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.2e-79 301.6 557 53.3
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 4.5e-79 299.7 558 52.9
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 5.9e-79 299.3 580 52.1
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 5.9e-79 299.3 615 46.7
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-78 298.1 552 48.4
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.7e-78 297.7 546 51.8
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.7e-78 297.7 553 53.3
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.2e-78 297.4 546 51.6
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 5.0e-78 296.2 581 49.2
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 6.5e-78 295.8 555 51.2
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 8.5e-78 295.4 556 54.0
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-77 295.0 558 56.8
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.4e-77 294.7 554 53.8
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.9e-77 294.3 561 56.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 5.5e-77 292.7 547 53.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 7.2e-77 292.4 557 51.3
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 7.2e-77 292.4 548 48.9
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.6e-76 290.0 577 47.7
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 4.6e-76 289.7 544 51.7
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 5.1e-75 286.2 559 49.4
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.1e-74 285.0 568 47.7
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.5e-74 284.6 554 51.3
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 2.5e-74 283.9 567 46.2
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 3.3e-74 283.5 560 49.5
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 3.3e-74 283.5 574 54.4
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 4.3e-74 283.1 563 51.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 4.3e-74 283.1 562 51.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.7e-74 282.7 553 51.7
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.3e-73 281.6 551 49.7
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.3e-73 281.6 553 51.9
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 6.3e-73 279.3 555 49.0
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.4e-72 278.1 554 49.1
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 2.4e-72 277.3 563 50.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 3.1e-72 276.9 562 54.1
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.1e-72 276.9 579 48.5
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 5.3e-72 276.2 554 49.6
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.5e-71 274.6 564 48.2
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.0e-71 274.2 558 46.8
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.6e-71 273.9 540 50.6
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 5.9e-71 272.7 556 47.8
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 7.7e-71 272.3 571 48.3
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 5.0e-70 269.6 544 52.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 6.5e-70 269.2 549 49.4
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.5e-69 267.3 557 45.4
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.6e-68 264.6 541 51.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 4.6e-68 263.1 577 44.2
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 6.1e-68 262.7 557 47.0
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.5e-66 258.1 559 51.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.0e-66 257.7 585 49.2
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.7e-65 254.6 540 47.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.1e-64 250.4 535 49.2
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.6e-63 247.3 552 54.3
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.9e-61 241.1 556 47.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.2e-61 240.4 539 48.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.5e-61 239.6 565 43.0
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 7.9e-60 235.7 540 50.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-59 235.3 198 69.7
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.4e-59 235.0 537 47.3
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 3.0e-59 233.8 557 48.5
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 9.7e-58 228.8 561 46.2
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-56 225.3 166 75.9
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.1e-56 225.3 594 44.3
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.1e-56 225.3 216 63.0
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 5.3e-56 223.0 170 73.5
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.6e-55 221.5 489 49.9
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.2e-54 217.6 188 69.1
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.6e-50 204.1 180 63.9
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 5.7e-50 203.0 156 71.2
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 9.7e-50 202.2 543 41.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.1e-48 198.7 527 38.5
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.4e-48 198.4 598 46.7
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 8.5e-46 189.1 480 44.8
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.1e-44 184.5 470 47.0
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-33 148.7 111 75.7
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 5.4e-32 143.3 123 66.7
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 7.8e-31 139.4 127 66.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 4.3e-29 133.7 290 49.3
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.0e-26 124.8 480 43.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.3e-25 122.1 109 65.1
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 2.4e-24 117.9 132 62.1
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 3.2e-24 117.5 103 67.0
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.7e-23 114.4 111 64.0
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.9e-21 108.2 128 54.7
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.3e-17 95.5 166 39.2
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.2e-17 94.7 140 45.7
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.9e-17 94.4 64 76.6
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.7e-17 94.0 108 51.9
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.9e-17 93.6 83 62.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 6.0e-15 86.7 57 78.9
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.3e-14 85.5 519 33.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-13 81.6 75 66.7
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.1e-11 75.9 57 73.7
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 4.4e-10 70.5 86 53.5
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.9e-09 67.0 80 60.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.9e-09 67.0 80 60.0
BcaB04g19993 Brassica carinata HOM05D004889 ORTHO05D005478 5.4e-08 63.5 65 64.6
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 7.8e-07 59.7 84 45.2
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.3e-06 58.9 85 42.4
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.7e-06 58.5 84 44.0
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.3e-06 58.2 207 30.4
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.3e-06 58.2 77 53.2
BcaC04g23280 Brassica carinata HOM05D000171 ORTHO05D000101 3.9e-06 57.4 37 83.8
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.9e-06 57.4 48 66.7
C09p10210 Brassica napus HOM05D000171 ORTHO05D000101 8.6e-06 56.2 36 86.1


User provided reference genes

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