Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.2e-124 449.9 232 100.0
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 2.0e-111 406.0 232 90.5
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 4.4e-111 404.8 232 91.4
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.1e-109 398.3 232 86.2
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 3.5e-108 395.2 232 84.1
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 7.2e-106 387.5 234 85.9
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 6.3e-102 374.4 233 84.5
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 7.0e-101 370.9 234 83.8
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 5.0e-99 364.8 236 81.8
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 4.2e-98 361.7 229 81.7
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 3.4e-95 352.1 236 81.4
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 4.9e-94 348.2 250 76.8
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 8.3e-94 347.4 229 76.4
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.7e-91 339.7 238 79.0
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.7e-83 313.2 234 67.1
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 5.0e-83 311.6 234 66.7
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 6.6e-83 311.2 227 66.5
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 4.3e-82 308.5 212 79.7
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 9.5e-82 307.4 234 66.7
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.1e-81 306.2 235 65.5
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 2.8e-81 305.8 229 66.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 2.8e-81 305.8 227 67.0
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.7e-81 305.1 223 66.4
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.1e-80 303.9 229 66.4
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.3e-80 302.8 233 66.5
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.2e-79 300.4 229 65.1
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.2e-79 300.4 234 66.7
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.0e-79 299.7 230 65.7
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 5.8e-79 298.1 232 65.1
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.3e-78 297.0 234 64.1
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.7e-78 296.6 229 63.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.7e-78 296.6 213 77.5
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 3.7e-78 295.4 234 68.4
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.4e-77 293.5 229 62.9
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 3.2e-77 292.4 234 65.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.2e-76 290.4 241 62.2
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.6e-76 290.0 224 67.0
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 1.6e-76 290.0 229 63.8
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.0e-75 287.3 234 61.5
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.3e-75 287.0 234 62.8
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 5.0e-75 285.0 237 62.0
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.1e-74 283.9 232 61.2
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.1e-74 283.9 229 63.8
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.5e-74 282.7 230 62.2
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.2e-73 280.4 226 65.0
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.2e-73 280.4 230 61.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.6e-73 280.0 230 61.7
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.1e-73 279.6 234 61.1
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 3.6e-73 278.9 229 62.0
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 6.2e-73 278.1 224 61.2
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 8.1e-73 277.7 233 64.4
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.1e-72 277.3 234 60.7
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.1e-72 277.3 226 63.3
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.3e-72 276.2 230 63.9
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 6.8e-72 274.6 226 63.3
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 8.9e-72 274.2 229 61.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 2.6e-71 272.7 224 62.5
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.6e-71 272.7 225 61.8
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 9.9e-71 270.8 232 61.6
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.3e-70 270.4 234 61.1
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.7e-70 270.0 229 60.3
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.9e-70 268.5 225 58.2
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 8.3e-70 267.7 234 60.3
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 8.3e-70 267.7 225 64.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.4e-69 266.9 243 56.4
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 3.2e-69 265.8 235 59.6
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 7.1e-69 264.6 210 62.9
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.1e-68 263.1 232 59.5
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.3e-67 260.4 218 59.6
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.3e-67 259.6 231 59.3
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.3e-67 259.6 231 59.3
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 5.1e-67 258.5 234 58.5
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.9e-66 256.5 211 62.1
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 3.3e-66 255.8 235 57.9
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.2e-65 253.8 231 61.0
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.6e-65 253.4 231 58.4
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 2.1e-65 253.1 228 58.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-64 250.8 228 59.2
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.8e-64 250.0 222 59.0
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.8e-64 250.0 239 56.9
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 4.0e-64 248.8 222 58.6
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 5.2e-64 248.4 212 58.5
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.8e-64 248.1 228 58.8
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 8.9e-64 247.7 220 58.6
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.2e-63 247.3 233 58.8
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.0e-63 246.5 234 56.4
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 2.6e-63 246.1 238 55.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 5.8e-63 245.0 228 58.3
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 5.8e-63 245.0 227 56.4
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.8e-62 242.3 228 57.9
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 3.8e-62 242.3 227 55.9
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 8.4e-62 241.1 235 54.5
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 8.4e-62 241.1 236 56.4
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 5.4e-61 238.4 205 59.5
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 1.6e-60 236.9 276 48.2
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.7e-60 236.1 246 52.8
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.3e-59 233.8 225 56.0
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.5e-58 230.3 279 48.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.5e-55 220.3 219 53.4
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.0e-55 219.9 183 63.4
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 7.6e-55 218.0 233 56.7
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.1e-53 214.2 236 50.4
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 3.9e-51 205.7 235 50.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 5.6e-50 201.8 172 61.6
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.7e-46 190.3 129 79.8
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 8.4e-46 188.0 157 64.3
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.1e-45 187.6 230 48.3
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.0e-43 181.0 138 66.7
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.3e-43 180.6 221 48.9
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.8e-43 180.3 230 46.5
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 3.0e-43 179.5 269 44.2
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 8.1e-41 171.4 212 44.3
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 2.0e-39 166.8 191 46.1
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.4e-37 160.6 227 41.0
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 1.4e-37 160.6 133 58.6
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 4.2e-37 159.1 233 41.6
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.0e-36 155.2 185 44.3
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 5.1e-35 152.1 230 44.3
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 7.4e-34 148.3 93 73.1
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 9.6e-34 147.9 235 42.6
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 8.2e-33 144.8 214 42.5
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 9.0e-32 141.4 131 55.0
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.2e-28 131.0 95 65.3
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.5e-26 123.2 102 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 3.3e-26 122.9 129 54.3
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 5.9e-23 112.1 138 45.7
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.9e-22 109.8 99 52.5
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 4.3e-18 95.9 206 34.5
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 7.4e-18 95.1 163 36.2
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.8e-17 92.4 135 44.4
BolC2t12268H Brassica oleracea HOM05D005662 ORTHO05D007004 6.9e-16 88.6 56 75.0
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 5.9e-15 85.5 74 55.4
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.7e-14 84.0 95 45.3
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 8.5e-14 81.6 109 41.3
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.5e-13 80.1 72 56.9
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 3.2e-13 79.7 183 30.6
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.2e-13 79.3 134 38.8
AL1G36890 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 2.3e-11 73.6 41 82.9
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.3e-11 73.6 53 64.2
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.1e-10 71.2 88 46.6
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.2e-07 61.2 59 57.6
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 4.5e-07 59.3 103 38.8
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-06 57.0 97 39.2


User provided reference genes

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