Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 1.1e-130 469.9 239 100.0
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 9.1e-120 433.7 242 92.1
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 1.4e-112 409.8 239 88.7
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 5.5e-109 397.9 245 85.3
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 6.1e-108 394.4 238 85.7
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 4.8e-105 384.8 242 81.8
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 8.2e-105 384.0 239 82.4
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 8.2e-105 384.0 239 82.4
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 9.1e-104 380.6 239 81.2
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 2.0e-103 379.4 239 81.2
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 2.1e-100 369.4 238 79.4
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 1.6e-76 290.0 240 67.1
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 4.9e-65 251.9 201 64.2
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 8.3e-65 251.1 201 64.2
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 1.1e-64 250.8 213 59.2
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 9.2e-64 247.7 200 61.5
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 1.2e-63 247.3 198 63.6
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 2.7e-63 246.1 230 56.1
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 3.5e-63 245.7 225 58.2
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 1.0e-62 244.2 221 57.5
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 8.6e-62 241.1 223 57.0
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 1.5e-61 240.4 205 60.0
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 2.5e-61 239.6 220 58.6
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 3.3e-61 239.2 196 62.2
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 7.3e-61 238.0 225 56.9
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 9.5e-61 237.7 221 56.6
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 9.5e-61 237.7 208 60.6
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 1.2e-60 237.3 196 62.2
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 1.6e-60 236.9 194 62.4
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 1.6e-60 236.9 232 56.9
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.6e-60 235.7 224 56.2
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 4.7e-60 235.3 220 57.3
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 4.7e-60 235.3 202 60.4
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 1.1e-59 234.2 221 57.0
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.4e-59 233.8 221 57.0
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 1.4e-59 233.8 228 53.1
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 1.8e-59 233.4 205 59.5
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 2.3e-59 233.0 224 55.8
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 3.1e-59 232.6 203 59.1
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 5.2e-59 231.9 222 53.2
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 6.8e-59 231.5 232 56.5
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 6.8e-59 231.5 215 56.3
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 8.9e-59 231.1 214 57.5
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 8.9e-59 231.1 213 58.2
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 2.6e-58 229.6 238 52.5
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 3.4e-58 229.2 197 58.9
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 3.4e-58 229.2 213 56.3
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 4.4e-58 228.8 231 52.8
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.8e-58 228.4 224 54.5
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 9.9e-58 227.6 222 55.0
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 9.9e-58 227.6 216 56.0
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 1.3e-57 227.3 194 60.3
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 1.3e-57 227.3 225 53.3
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.9e-57 226.1 218 54.1
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 3.7e-57 225.7 224 54.0
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 3.7e-57 225.7 200 58.5
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.9e-57 225.3 236 53.0
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 4.9e-57 225.3 190 60.5
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 6.4e-57 224.9 229 53.3
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 8.3e-57 224.6 221 53.8
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.4e-56 223.8 222 54.5
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 1.4e-56 223.8 205 57.1
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 1.4e-56 223.8 218 55.5
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 1.9e-56 223.4 224 54.5
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 2.4e-56 223.0 216 55.1
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 2.4e-56 223.0 234 52.6
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 4.1e-56 222.2 230 53.0
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 5.4e-56 221.9 215 54.9
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 7.1e-56 221.5 224 54.0
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 7.1e-56 221.5 230 53.0
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 9.2e-56 221.1 215 56.3
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 9.2e-56 221.1 218 53.2
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 2.1e-55 219.9 211 54.5
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 4.6e-55 218.8 222 54.1
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 6.0e-55 218.4 189 58.7
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 6.0e-55 218.4 223 55.2
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 1.3e-54 217.2 185 59.5
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 1.7e-54 216.9 218 53.7
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.7e-54 216.9 227 53.3
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 2.3e-54 216.5 187 60.4
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 2.3e-54 216.5 215 54.0
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 8.6e-54 214.5 235 50.2
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 5.6e-53 211.8 199 53.8
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 2.1e-52 209.9 203 54.2
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 1.2e-50 204.1 187 55.1
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 2.9e-49 199.5 235 50.2
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 6.4e-49 198.4 185 56.8
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 6.4e-49 198.4 216 54.2
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 6.4e-49 198.4 210 49.5
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.4e-48 196.4 229 49.8
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 5.4e-48 195.3 193 52.8
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 6.2e-44 181.8 197 53.3
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 6.9e-43 178.3 142 62.7
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.5e-42 177.2 200 47.0
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 4.4e-42 175.6 181 50.8
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 1.7e-41 173.7 198 45.5
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 2.2e-41 173.3 142 61.3
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 1.9e-40 170.2 189 48.7
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.5e-37 159.8 196 44.9
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 3.3e-37 159.5 183 46.4
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 5.6e-37 158.7 203 44.3
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 9.6e-37 157.9 201 45.8
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 2.8e-36 156.4 169 45.0
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 1.8e-35 153.7 169 48.5
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 2.4e-32 143.3 212 42.0
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 2.0e-26 123.6 175 45.7
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 9.3e-24 114.8 176 39.2
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 2.1e-23 113.6 221 33.0
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 3.5e-23 112.8 146 45.9
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 4.6e-23 112.5 139 46.8
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 1.0e-22 111.3 67 79.1
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 5.6e-21 105.5 89 59.6
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 8.4e-17 91.7 130 39.2
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 1.6e-15 87.4 83 53.0
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 7.4e-13 78.6 99 40.4
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 6.3e-12 75.5 131 36.6
BraA06t25829Z Brassica rapa HOM05D014866 ORTHO05D022047 6.9e-11 72.0 101 42.6
C03p64800 Brassica napus HOM05D014866 ORTHO05D022047 4.5e-10 69.3 49 63.3
BolC3t18743H Brassica oleracea HOM05D014866 ORTHO05D022047 4.5e-10 69.3 49 63.3
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 7.7e-10 68.6 75 48.0


User provided reference genes

Program Settings