Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G38900 Arabidopsis lyrata HOM05D000196 ORTHO05D013467 1.0e-84 316.6 155 100.0
AT5G62120 Arabidopsis thaliana HOM05D000196 ORTHO05D011356 1.9e-46 189.5 159 70.4
Thhalv10005676m.g Eutrema salsugineum HOM05D000196 ORTHO05D011356 6.7e-31 137.9 150 54.0
C03p64850 Brassica napus HOM05D013031 ORTHO05D013467 2.4e-28 129.4 152 46.7
BolC3t18746H Brassica oleracea HOM05D013031 ORTHO05D013467 2.4e-28 129.4 152 46.7
Thhalv10016040m.g Eutrema salsugineum HOM05D000196 ORTHO05D011356 4.5e-19 98.6 99 45.5
BraA02t09131Z Brassica rapa HOM05D013031 ORTHO05D013467 1.0e-18 97.4 155 36.8
AT2G27070 Arabidopsis thaliana HOM05D000196 ORTHO05D011356 2.2e-18 96.3 195 31.3
BcaB01g06030 Brassica carinata HOM05D000196 ORTHO05D011356 2.9e-18 95.9 205 30.7
AT5G07210 Arabidopsis thaliana HOM05D000196 ORTHO05D011356 5.0e-18 95.1 200 30.0
CARHR205930 Cardamine hirsuta HOM05D000196 ORTHO05D011356 5.0e-18 95.1 115 42.6
C03p03570 Brassica napus HOM05D000196 ORTHO05D011356 6.5e-18 94.7 199 31.2
Carub.0006s0614 Capsella rubella HOM05D000196 ORTHO05D011356 8.4e-18 94.4 199 31.7
Carub.0007s2972 Capsella rubella HOM05D000196 ORTHO05D011356 1.1e-17 94.0 178 33.7
BcaB01g06350 Brassica carinata HOM05D000196 ORTHO05D011356 1.4e-17 93.6 203 28.6
BcaB05g21628 Brassica carinata HOM05D000196 ORTHO05D011356 1.4e-17 93.6 206 31.6
BolC3t12897H Brassica oleracea HOM05D000196 ORTHO05D011356 1.4e-17 93.6 202 30.7
C02p03030 Brassica napus HOM05D000196 ORTHO05D011356 5.5e-17 91.7 176 31.8
Carub.0007s2971 Capsella rubella HOM05D000196 ORTHO05D011356 5.5e-17 91.7 197 30.5
BcaC03g13182 Brassica carinata HOM05D000196 ORTHO05D011356 2.7e-16 89.4 99 39.4
BolC2t06264H Brassica oleracea HOM05D000196 ORTHO05D011356 2.7e-16 89.4 99 39.4
BraA02t04909Z Brassica rapa HOM05D000196 ORTHO05D011356 2.7e-16 89.4 99 39.4
A03p03150 Brassica napus HOM05D000196 ORTHO05D011356 7.9e-16 87.8 203 28.6
BraA03t09671Z Brassica rapa HOM05D000196 ORTHO05D011356 7.9e-16 87.8 203 28.6
BcaC06g32462 Brassica carinata HOM05D000196 ORTHO05D011356 3.9e-15 85.5 99 41.4
C09p69330 Brassica napus HOM05D000196 ORTHO05D011356 5.1e-15 85.1 204 27.5
BolC9t59677H Brassica oleracea HOM05D000196 ORTHO05D011356 5.1e-15 85.1 204 27.5
A10p28970 Brassica napus HOM05D000196 ORTHO05D011356 8.7e-15 84.3 204 27.5
BraA10t44945Z Brassica rapa HOM05D000196 ORTHO05D011356 8.7e-15 84.3 204 27.5
AL5G25030 Arabidopsis lyrata HOM05D000503 ORTHO05D011356 1.5e-14 83.6 99 42.4
THA.LOC104818272 Tarenaya hassleriana HOM05D000196 ORTHO05D011356 2.4e-12 76.3 111 39.6
Aa31LG3G19160 Aethionema arabicum HOM05D000196 ORTHO05D011356 1.2e-11 73.9 164 31.7
SalBow2G0052 Salvia bowleyana HOM05D000196 ORTHO05D000279 2.6e-11 72.8 165 33.3
PGSC0003DMG400013776 Solanum tuberosum HOM05D000196 ORTHO05D000279 1.4e-09 67.0 179 28.5
Gohir.D12G261750 Gossypium hirsutum HOM05D000196 ORTHO05D000279 2.7e-08 62.8 193 29.0
Ciclev10006586m.g Citrus clementina HOM05D000196 ORTHO05D000279 4.6e-08 62.0 138 31.9
Medtr0450s0040 Medicago truncatula HOM05D000196 ORTHO05D000279 1.0e-07 60.8 162 30.2
Thecc.03G170200 Theobroma cacao HOM05D000196 ORTHO05D000279 1.0e-07 60.8 184 28.3
Gorai.008G280500 Gossypium raimondii HOM05D000196 ORTHO05D000279 3.0e-07 59.3 193 28.5
Gohir.A12G260850 Gossypium hirsutum HOM05D000196 ORTHO05D000279 5.1e-07 58.5 193 28.5
Lsat_1_v5_gn_5_39921 Lactuca sativa HOM05D000196 ORTHO05D000279 5.1e-07 58.5 154 26.6
Manes.14G029400 Manihot esculenta HOM05D000196 ORTHO05D000279 5.1e-07 58.5 97 36.1
TPR.G25053 Trifolium pratense HOM05D000196 ORTHO05D000279 5.1e-07 58.5 154 24.0
Manes.06G143400 Manihot esculenta HOM05D000196 ORTHO05D000279 1.1e-06 57.4 100 32.0
CANSAT21G0855 Cannabis sativa HOM05D000196 ORTHO05D000279 2.0e-06 56.6 120 33.3
CsaV3_3G016780 Cucumis sativus L. HOM05D005596 ORTHO05D006994 2.0e-06 56.6 178 27.5
MELO3C006873.2 Cucumis melo HOM05D000196 ORTHO05D000279 2.5e-06 56.2 177 27.1
AUR62042023 Chenopodium quinoa HOM05D000196 ORTHO05D000279 3.3e-06 55.8 155 25.2
ClCG05G007790 Citrullus lanatus HOM05D005596 ORTHO05D006994 3.3e-06 55.8 175 26.9
Ciclev10006834m.g Citrus clementina HOM05D000196 ORTHO05D000279 3.3e-06 55.8 165 27.9
CANSAT21G2209 Cannabis sativa HOM05D000196 ORTHO05D000279 4.3e-06 55.5 120 32.5
AL5G45420 Arabidopsis lyrata HOM05D000196 ORTHO05D015337 5.7e-06 55.1 172 26.7
arahy.Tifrunner.gnm1.ann1.0DD300 Arachis hypogaea HOM05D000196 ORTHO05D000279 5.7e-06 55.1 174 26.4
arahy.Tifrunner.gnm1.ann1.QRG75F Arachis hypogaea HOM05D000196 ORTHO05D000279 5.7e-06 55.1 174 26.4
Manes.03G201000 Manihot esculenta HOM05D000196 ORTHO05D000279 5.7e-06 55.1 175 23.4
PGR142G0180 Punica granatum HOM05D000196 ORTHO05D000279 5.7e-06 55.1 204 25.5
Rhsim07G0163000 Rhododendron simsii HOM05D000196 ORTHO05D000279 5.7e-06 55.1 178 26.4
HPP92_017495 Vanilla planifolia HOM05D000196 ORTHO05D000279 7.4e-06 54.7 183 26.8


User provided reference genes

Program Settings