Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G38840 Arabidopsis lyrata HOM05D007974 ORTHO05D010062 5.9e-67 257.3 121 100.0
AT5G62065 Arabidopsis thaliana HOM05D007974 ORTHO05D010062 1.1e-60 236.5 121 93.4
Carub.0008s2274 Capsella rubella HOM05D007974 ORTHO05D010062 6.5e-58 227.3 116 90.5
Thhalv10005335m.g Eutrema salsugineum HOM05D007974 ORTHO05D010062 4.7e-56 221.1 117 87.2
CARHR275850 Cardamine hirsuta HOM05D007974 ORTHO05D010062 4.4e-54 214.5 117 87.2
C03p64890 Brassica napus HOM05D007974 ORTHO05D010062 9.7e-54 213.4 118 83.1
BolC3t18751H Brassica oleracea HOM05D007974 ORTHO05D010062 9.7e-54 213.4 118 83.1
BraA06t25817Z Brassica rapa HOM05D007974 ORTHO05D010062 1.3e-53 213.0 116 84.5
A06p28760 Brassica napus HOM05D007974 ORTHO05D010062 1.7e-53 212.6 116 84.5
BcaB02g09619 Brassica carinata HOM05D007974 ORTHO05D010062 5.9e-51 204.1 121 83.5
Aa31LG11G1470 Aethionema arabicum HOM05D007974 ORTHO05D010062 1.5e-49 199.5 120 77.5
Sp2g25230 Schrenkiella parvula HOM05D007974 ORTHO05D010062 7.2e-49 197.2 100 89.0
THA.LOC104820164 Tarenaya hassleriana HOM05D007974 ORTHO05D010062 1.2e-40 169.9 105 71.4
Atru.chr1.506 Acer truncatum HOM05D007974 ORTHO05D010062 1.6e-32 142.9 109 58.7
CiPaw.04G066500 Carya illinoinensis HOM05D007974 ORTHO05D010062 1.2e-30 136.7 119 51.3
Eucgr.K00232 Eucalyptus grandis HOM05D007974 ORTHO05D010062 1.5e-30 136.3 116 55.2
Eucgr.L02686 Eucalyptus grandis HOM05D007974 ORTHO05D010062 1.5e-30 136.3 116 55.2
CSS0036952 Camellia sinensis var. sinensis HOM05D007974 ORTHO05D010062 2.0e-30 136.0 110 58.2
Dinv28469 Davidia involucrata HOM05D007974 ORTHO05D010062 2.0e-30 136.0 110 57.3
QL09p014742 Quercus lobata HOM05D007974 ORTHO05D010062 5.7e-30 134.4 105 56.2
Lsat_1_v5_gn_8_6981 Lactuca sativa HOM05D007974 ORTHO05D010062 7.5e-30 134.0 99 61.6
DCAR_018180 Daucus carota HOM05D007974 ORTHO05D010062 1.7e-29 132.9 108 55.6
ECA233G5549 Erigeron canadensis HOM05D007974 ORTHO05D010062 2.2e-29 132.5 91 64.8
Thecc.03G172000 Theobroma cacao HOM05D007974 ORTHO05D010062 2.2e-29 132.5 107 57.9
GSVIVG01010603001 Vitis vinifera HOM05D007974 ORTHO05D010062 3.7e-29 131.7 93 57.0
Oeu022576.1 Olea europaea HOM05D007974 ORTHO05D010062 1.1e-28 130.2 88 62.5
Actinidia32884 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.4e-28 129.8 99 57.6
Actinidia34090 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.8e-28 129.4 112 54.5
Duzib068G0871 Durio zibethinus HOM05D007974 ORTHO05D010062 1.8e-28 129.4 97 56.7
Nitab4.5_0004843g0030 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.8e-28 129.4 90 61.1
MSTRG.8445 Avicennia marina HOM05D007974 ORTHO05D010062 2.4e-28 129.0 93 61.3
HanXRQChr13g0393691 Helianthus annuus HOM05D007974 ORTHO05D010062 2.4e-28 129.0 110 57.3
Solyc03g026090.4 Solanum lycopersicum HOM05D007974 ORTHO05D010062 2.4e-28 129.0 95 57.9
Sopen03g004930 Solanum pennellii HOM05D007974 ORTHO05D010062 7.0e-28 127.5 95 57.9
Aqoxy5G03970 Aquilegia oxysepala HOM05D007974 ORTHO05D010062 9.2e-28 127.1 104 51.0
CiPaw.03G103600 Carya illinoinensis HOM05D007974 ORTHO05D010062 9.2e-28 127.1 121 48.8
Nitab4.5_0002107g0020 Nicotiana tabacum HOM05D007974 ORTHO05D010062 9.2e-28 127.1 109 54.1
Hma1.2p1_0270F.1_g108330 Hydrangea macrophylla HOM05D007974 ORTHO05D010062 1.2e-27 126.7 89 59.6
CAN.G769.6 Capsicum annuum HOM05D007974 ORTHO05D010062 3.5e-27 125.2 111 54.1
Ciclev10006787m.g Citrus clementina HOM05D007974 ORTHO05D010062 3.5e-27 125.2 89 55.1
MBI12_g15161_MAGBIO Magnolia biondii HOM05D007974 ORTHO05D010062 3.5e-27 125.2 108 50.0
Nn6g34222 Nelumbo nucifera HOM05D007974 ORTHO05D010062 3.5e-27 125.2 105 52.4
PGSC0003DMG400014320 Solanum tuberosum HOM05D007974 ORTHO05D010062 3.5e-27 125.2 110 53.6
Migut.F01135 Erythranthe guttata HOM05D007974 ORTHO05D010062 4.6e-27 124.8 92 59.8
Rhsim03G0178300 Rhododendron simsii HOM05D007974 ORTHO05D010062 7.8e-27 124.0 98 57.1
Manes.06G145100 Manihot esculenta HOM05D007974 ORTHO05D010062 3.0e-26 122.1 112 50.0
Potri.012G139700 Populus trichocarpa HOM05D007974 ORTHO05D010062 1.1e-25 120.2 107 49.5
Prupe.2G291200 Prunus persica HOM05D007974 ORTHO05D010062 1.1e-25 120.2 112 50.0
Cpa.g.sc107.23 Carica papaya HOM05D007974 ORTHO05D010062 1.5e-25 119.8 92 51.1
MD01G1197800 Malus domestica HOM05D007974 ORTHO05D010062 1.5e-25 119.8 94 53.2
EL10Ac3g05720 Beta vulgaris HOM05D007974 ORTHO05D010062 1.9e-25 119.4 109 49.5
Sc19g0000020 Simmondsia chinensis HOM05D007974 ORTHO05D010062 1.9e-25 119.4 100 53.0
Sc19g0001640 Simmondsia chinensis HOM05D007974 ORTHO05D010062 3.3e-25 118.6 100 53.0
COL.COLO4_14276 Corchorus olitorius HOM05D000659 ORTHO05D000505 4.3e-25 118.2 91 54.9
arahy.Tifrunner.gnm1.ann1.G5CYYB Arachis hypogaea HOM05D007974 ORTHO05D010062 4.7e-24 114.8 92 54.3
Gohir.A12G260000 Gossypium hirsutum HOM05D007974 ORTHO05D010062 6.2e-24 114.4 107 47.7
Glyma.20G156300 Glycine max HOM05D007974 ORTHO05D010062 1.0e-23 113.6 108 47.2
LjContig00238g0026064 Lotus japonicus HOM05D007974 ORTHO05D010062 2.3e-23 112.5 109 45.0
Gohir.D12G260800 Gossypium hirsutum HOM05D007974 ORTHO05D010062 5.2e-23 111.3 107 46.7
Phvul.007G067200 Phaseolus vulgaris HOM05D007974 ORTHO05D010062 6.8e-23 110.9 98 46.9
PGR142G2606 Punica granatum HOM05D007974 ORTHO05D010062 1.2e-22 110.2 111 45.9
VMungo0720G1552 Vigna mungo HOM05D007974 ORTHO05D010062 1.5e-22 109.8 94 45.7
FAN10G0057 Fragaria x ananassa HOM05D007974 ORTHO05D010062 4.4e-22 108.2 108 43.5
Gorai.008G279400 Gossypium raimondii HOM05D007974 ORTHO05D010062 5.8e-22 107.8 105 46.7
RcHm_v2.0_Chr1g0376841 Rosa chinensis HOM05D007974 ORTHO05D010062 9.8e-22 107.1 112 45.5
Sabra12G0104700 Salix brachista HOM05D000659 ORTHO05D000505 9.8e-22 107.1 87 50.6
FvH4_7g29100 Fragaria vesca HOM05D007974 ORTHO05D010062 2.9e-21 105.5 118 42.4
Glyma.10G238250 Glycine max HOM05D007974 ORTHO05D010062 2.9e-21 105.5 104 47.1
TPR.G17393 Trifolium pratense HOM05D007974 ORTHO05D010062 2.9e-21 105.5 88 50.0
Cfa008290 Carpinus fangiana HOM05D007974 ORTHO05D010062 3.7e-21 105.1 103 45.6
ATR0757G011 Amborella trichopoda HOM05D007974 ORTHO05D010062 4.9e-21 104.8 104 44.2
FAN06G2079 Fragaria x ananassa HOM05D007974 ORTHO05D010062 6.4e-21 104.4 116 42.2
FAN03G0127 Fragaria x ananassa HOM05D007974 ORTHO05D010062 8.3e-21 104.0 106 43.4
Medtr1g101320 Medicago truncatula HOM05D007974 ORTHO05D010062 8.3e-21 104.0 89 53.9
FAN03G1543 Fragaria x ananassa HOM05D007974 ORTHO05D010062 6.0e-19 97.8 106 41.5
Lsat_1_v5_gn_2_131621 Lactuca sativa HOM05D007974 ORTHO05D010062 3.6e-16 88.6 100 46.0
Actinidia03112 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.3e-13 80.1 114 39.5
Gohir.D11G325151 Gossypium hirsutum HOM05D007974 ORTHO05D010062 2.2e-13 79.3 76 44.7
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 1.3e-10 70.1 118 32.2
Potri.015G142100 Populus trichocarpa HOM05D007974 ORTHO05D010062 2.5e-09 65.9 73 38.4
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 2.1e-08 62.8 117 29.9
Actinidia31722 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.1e-07 60.5 118 28.8
Thecc.04G152500 Theobroma cacao HOM05D000275 ORTHO05D000181 1.1e-07 60.5 114 30.7
CsaV3_4G027160 Cucumis sativus L. HOM05D000275 ORTHO05D000181 1.4e-07 60.1 101 32.7
Lalb_Chr12g0203591 Lupinus albus HOM05D006508 ORTHO05D003378 1.8e-07 59.7 107 29.9
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 2.3e-07 59.3 107 29.0
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 5.2e-07 58.2 113 28.3
Aa31LG5G22770 Aethionema arabicum HOM05D000275 ORTHO05D003378 6.8e-07 57.8 119 24.4
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 1.2e-06 57.0 114 28.9
Medtr7g072900 Medicago truncatula HOM05D000275 ORTHO05D000181 1.2e-06 57.0 107 28.0
Ca_26537_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 1.5e-06 56.6 121 27.3
DCAR_009006 Daucus carota HOM05D000275 ORTHO05D000181 1.5e-06 56.6 92 30.4
Migut.H00915 Erythranthe guttata HOM05D000275 ORTHO05D000181 2.0e-06 56.2 110 28.2
CANSAT35G1507 Cannabis sativa HOM05D000275 ORTHO05D000181 3.4e-06 55.5 110 28.2
AL6G10160 Arabidopsis lyrata HOM05D000275 ORTHO05D000181 4.4e-06 55.1 117 32.5
MELO3C025219.2 Cucumis melo HOM05D000275 ORTHO05D000181 4.4e-06 55.1 101 31.7
DCAR_009008 Daucus carota HOM05D000275 ORTHO05D000181 4.4e-06 55.1 92 30.4
Migut.L00639 Erythranthe guttata HOM05D000275 ORTHO05D000181 4.4e-06 55.1 110 28.2
Medtr4g028180 Medicago truncatula HOM05D000275 ORTHO05D000181 4.4e-06 55.1 119 26.1
CANSAT35G0461 Cannabis sativa HOM05D000275 ORTHO05D000181 5.8e-06 54.7 115 27.8
HanXRQChr01g0018461 Helianthus annuus HOM05D000275 ORTHO05D000181 5.8e-06 54.7 112 27.7
Medtr7g072980 Medicago truncatula HOM05D000275 ORTHO05D000181 5.8e-06 54.7 92 29.3
AUR62006382 Chenopodium quinoa HOM05D000275 ORTHO05D000181 7.6e-06 54.3 110 28.2
AUR62029724 Chenopodium quinoa HOM05D000275 ORTHO05D000181 7.6e-06 54.3 106 27.4
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 7.6e-06 54.3 92 31.5
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 7.6e-06 54.3 105 31.4
Psat7g228120 Pisum sativum HOM05D000275 ORTHO05D000181 9.9e-06 53.9 108 28.7


User provided reference genes

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