Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G38630 Arabidopsis lyrata HOM05D002266 ORTHO05D010337 9.1e-232 806.6 423 100.0
AT5G61865 Arabidopsis thaliana HOM05D002266 ORTHO05D010337 2.9e-214 748.4 424 94.8
Carub.0008s2256 Capsella rubella HOM05D002266 ORTHO05D010337 6.6e-206 720.7 421 89.8
CARHR275630 Cardamine hirsuta HOM05D002266 ORTHO05D010337 1.7e-201 706.1 423 87.5
Sp2g25060 Schrenkiella parvula HOM05D002266 ORTHO05D010337 1.4e-192 676.4 425 86.1
Thhalv10005642m.g Eutrema salsugineum HOM05D002266 ORTHO05D010337 1.9e-192 676.0 423 86.3
A06p28540 Brassica napus HOM05D002266 ORTHO05D010337 1.4e-179 633.3 423 79.9
BcaC01g02442 Brassica carinata HOM05D002266 ORTHO05D010337 2.0e-178 629.4 423 79.4
C03p65250 Brassica napus HOM05D002266 ORTHO05D010337 2.0e-178 629.4 423 79.4
BolC3t18778H Brassica oleracea HOM05D002266 ORTHO05D010337 2.0e-178 629.4 423 79.4
BcaB02g09608 Brassica carinata HOM05D002266 ORTHO05D010337 8.4e-177 624.0 420 81.2
BraA06t25800Z Brassica rapa HOM05D002266 ORTHO05D010337 2.4e-176 622.5 417 80.1
Aa31LG11G1630 Aethionema arabicum HOM05D002266 ORTHO05D010337 9.3e-144 514.2 421 67.0
THA.LOC104818284 Tarenaya hassleriana HOM05D002266 ORTHO05D010337 8.8e-102 374.8 433 51.3
Duzib205G1981 Durio zibethinus HOM05D002266 ORTHO05D010337 1.2e-74 284.6 397 44.6
Gohir.A07G046600 Gossypium hirsutum HOM05D002266 ORTHO05D010337 3.0e-73 280.0 415 42.2
Gohir.D07G050900 Gossypium hirsutum HOM05D002266 ORTHO05D010337 1.6e-71 274.2 418 42.1
Gorai.001G054000 Gossypium raimondii HOM05D002266 ORTHO05D010337 1.6e-71 274.2 418 42.1
Thecc.03G141000 Theobroma cacao HOM05D002266 ORTHO05D010337 2.0e-69 267.3 416 42.1
Sabra12G0079800 Salix brachista HOM05D002266 ORTHO05D010337 2.9e-68 263.5 401 42.1
Hma1.2p1_0452F.1_g155980 Hydrangea macrophylla HOM05D002266 ORTHO05D010337 4.9e-68 262.7 392 42.6
Lj5C86T8 Lonicera japonica HOM05D002266 ORTHO05D010337 6.4e-68 262.3 413 41.4
Prupe.5G140800 Prunus persica HOM05D002266 ORTHO05D010337 3.2e-67 260.0 397 42.6
Ciclev10033782m.g Citrus clementina HOM05D002266 ORTHO05D010337 7.1e-67 258.8 419 41.1
Atru.chr6.1922 Acer truncatum HOM05D002266 ORTHO05D010337 1.6e-66 257.7 424 41.7
Atru.chr6.1924 Acer truncatum HOM05D002266 ORTHO05D010337 1.6e-66 257.7 424 41.7
Potri.012G108900 Populus trichocarpa HOM05D002266 ORTHO05D010337 1.6e-66 257.7 390 43.1
Rhsim08G0198000 Rhododendron simsii HOM05D002266 ORTHO05D010337 6.0e-66 255.8 360 40.8
Manes.14G044300 Manihot esculenta HOM05D002266 ORTHO05D010337 3.0e-65 253.4 405 40.7
QL10p000420 Quercus lobata HOM05D002266 ORTHO05D010337 3.3e-64 250.0 394 40.4
MD14G1146800 Malus domestica HOM05D002266 ORTHO05D010337 1.2e-61 241.5 357 41.2
DCAR_025647 Daucus carota HOM05D002266 ORTHO05D010337 1.3e-60 238.0 402 37.3
TWI23G1291 Tripterygium wilfordii HOM05D002266 ORTHO05D010337 2.2e-60 237.3 408 38.5
Migut.D01181 Erythranthe guttata HOM05D002266 ORTHO05D010337 8.4e-60 235.3 408 38.0
FvH4_5g09640 Fragaria vesca HOM05D002266 ORTHO05D010337 5.4e-59 232.6 405 38.8
COL.COLO4_37262 Corchorus olitorius HOM05D002266 ORTHO05D010337 7.1e-59 232.3 321 43.6
RcHm_v2.0_Chr7g0188601 Rosa chinensis HOM05D002266 ORTHO05D010337 9.2e-59 231.9 406 38.7
FAN04G1258 Fragaria x ananassa HOM05D002266 ORTHO05D010337 7.8e-58 228.8 397 38.5
SGA_v2.0_scaffold74G24650 Striga asiatica HOM05D002266 ORTHO05D010337 8.7e-57 225.3 398 37.4
HanXRQChr05g0155381 Helianthus annuus HOM05D002266 ORTHO05D010337 3.3e-56 223.4 397 37.0
Cpa.g.sc13.178 Carica papaya HOM05D002266 ORTHO05D010337 1.4e-54 218.0 269 46.5
Cc04_g05840 Coffea canephora HOM05D002266 ORTHO05D010337 3.1e-54 216.9 400 37.0
Nitab4.5_0008403g0020 Nicotiana tabacum HOM05D002266 ORTHO05D010337 5.8e-53 212.6 412 37.6
Nitab4.5_0002584g0010 Nicotiana tabacum HOM05D002266 ORTHO05D010337 1.7e-52 211.1 413 37.3
Sopen12g021270 Solanum pennellii HOM05D002266 ORTHO05D010337 1.9e-51 207.6 354 36.4
Solyc12g042340.2 Solanum lycopersicum HOM05D002266 ORTHO05D010337 4.2e-51 206.5 409 34.7
FAN18G2616 Fragaria x ananassa HOM05D002266 ORTHO05D010337 4.6e-50 203.0 372 37.6
Lsat_1_v5_gn_5_10020 Lactuca sativa HOM05D002266 ORTHO05D010337 1.3e-49 201.4 400 34.0
Peaxi162Scf00135g01413 Petunia axillaris HOM05D002266 ORTHO05D010337 3.3e-48 196.8 411 35.0
Aqoxy3G02681 Aquilegia oxysepala HOM05D002266 ORTHO05D010337 9.6e-48 195.3 416 32.7
SalBow1G8312 Salvia bowleyana HOM05D002266 ORTHO05D010337 3.6e-47 193.4 407 34.2
unitig_747.g21318 Utricularia gibba HOM05D002266 ORTHO05D010337 3.6e-47 193.4 349 35.5
Oeu013660.2 Olea europaea HOM05D002266 ORTHO05D010337 6.2e-47 192.6 340 37.1
FAN13G2170 Fragaria x ananassa HOM05D002266 ORTHO05D010337 1.4e-46 191.4 372 36.3
Actinidia25516 Actinidia chinensis HOM05D002266 ORTHO05D010337 6.7e-41 172.6 313 35.5
PSO339G3582 Papaver somniferum HOM05D002266 ORTHO05D010337 6.7e-41 172.6 400 32.5
MBI07_g35979_MAGBIO Magnolia biondii HOM05D002266 ORTHO05D010337 1.5e-40 171.4 311 35.7
Dinv13716 Davidia involucrata HOM05D002266 ORTHO05D010337 1.1e-38 165.2 220 44.1
FAN08G1259 Fragaria x ananassa HOM05D002266 ORTHO05D010337 1.7e-36 157.9 371 34.0
PGSC0003DMG400014448 Solanum tuberosum HOM05D002266 ORTHO05D010337 4.6e-26 123.2 259 31.3
SEGI_02612 Sequoiadendron giganteum HOM05D002266 ORTHO05D000002 2.6e-21 107.5 362 27.9
Cpa.g.sc13.177 Carica papaya HOM05D002266 ORTHO05D010337 3.9e-09 67.0 182 35.2
AagrBONN_evm.TU.Sc2ySwM_228.1887 Anthoceros agrestis HOM05D002266 ORTHO05D010337 7.4e-08 62.8 282 23.8
Sabra13G0033600 Salix brachista HOM05D002266 ORTHO05D010337 6.3e-07 59.7 77 45.5


User provided reference genes

Program Settings