Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 5.6e-181 637.9 427 100.0
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.4e-176 623.2 427 89.0
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 2.7e-167 592.4 429 92.8
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 7.9e-167 590.9 418 83.7
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 3.3e-165 585.5 427 91.6
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 1.2e-162 577.0 418 81.3
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 1.2e-162 577.0 418 81.3
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.5e-162 576.6 420 81.7
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.5e-162 576.6 420 81.7
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.3e-161 573.5 427 89.0
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 1.4e-160 570.1 418 89.5
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 9.4e-160 567.4 418 90.4
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 8.8e-158 560.8 418 80.4
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.1e-155 553.9 418 88.5
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.4e-155 553.5 423 84.9
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-155 553.1 418 89.5
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 5.3e-155 551.6 420 82.4
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 7.0e-155 551.2 418 89.2
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 5.2e-150 535.0 435 77.0
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.8e-131 473.4 427 74.9
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.1e-127 459.9 425 70.1
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.2e-125 454.1 410 63.7
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 5.7e-125 451.8 427 67.7
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.4e-123 447.2 408 65.7
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 7.0e-123 444.9 408 72.8
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.2e-122 444.1 409 77.0
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.6e-122 443.7 404 63.1
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.6e-122 443.7 409 59.4
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 1.6e-122 443.7 409 59.4
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.6e-122 443.7 413 70.2
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 2.0e-122 443.4 413 74.8
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 2.7e-122 443.0 415 70.4
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 3.5e-122 442.6 407 63.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 4.5e-122 442.2 411 67.2
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 5.9e-122 441.8 415 66.3
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 7.8e-122 441.4 414 60.4
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.3e-121 440.7 416 73.1
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 1.7e-121 440.3 401 69.1
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.7e-121 440.3 410 67.3
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 1.7e-121 440.3 410 67.8
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 2.9e-121 439.5 421 58.2
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.8e-121 439.1 417 73.9
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.0e-121 438.7 409 75.8
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 5.0e-121 438.7 411 70.3
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 6.6e-121 438.3 400 69.8
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 8.6e-121 438.0 406 74.1
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.1e-120 437.6 410 78.3
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.1e-120 437.6 424 71.7
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 1.5e-120 437.2 406 58.6
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 1.5e-120 437.2 418 73.9
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.5e-120 437.2 408 65.2
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 3.3e-120 436.0 409 68.7
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 9.5e-120 434.5 411 69.6
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 9.5e-120 434.5 409 70.9
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 3.6e-119 432.6 419 70.9
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 3.6e-119 432.6 409 68.0
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 4.7e-119 432.2 395 68.1
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 6.1e-119 431.8 407 65.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 8.0e-119 431.4 408 61.5
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 8.0e-119 431.4 418 66.5
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.4e-118 430.6 422 69.7
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 1.4e-118 430.6 400 73.5
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 2.3e-118 429.9 400 73.5
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 4.0e-118 429.1 400 73.8
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 5.2e-118 428.7 432 53.7
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.2e-117 427.6 401 68.8
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.0e-117 426.8 430 70.0
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 2.6e-117 426.4 418 69.9
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 2.6e-117 426.4 394 70.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 3.4e-117 426.0 451 59.4
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 7.5e-117 424.9 416 59.6
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 1.7e-116 423.7 405 66.7
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 2.2e-116 423.3 413 65.9
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.7e-116 422.5 453 63.4
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 3.7e-116 422.5 401 70.1
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 8.3e-116 421.4 420 69.8
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 4.1e-115 419.1 403 68.2
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 7.0e-115 418.3 356 80.6
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 7.8e-114 414.8 420 57.4
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.3e-113 414.1 405 55.6
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.9e-112 410.2 354 78.0
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 6.8e-110 401.7 401 53.9
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 8.9e-110 401.4 360 67.5
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.5e-109 400.6 415 53.0
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.6e-109 399.8 410 64.1
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 4.4e-109 399.1 451 51.4
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 7.5e-109 398.3 419 64.9
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 9.8e-109 397.9 356 70.2
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-108 397.5 414 63.5
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-108 396.7 419 65.2
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 3.7e-108 396.0 368 72.6
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.9e-108 395.6 417 65.0
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 6.4e-108 395.2 389 71.0
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 8.3e-108 394.8 353 68.3
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 1.2e-106 391.0 355 62.3
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.6e-106 390.6 396 61.9
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.6e-103 380.6 360 56.7
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 6.2e-103 378.6 356 64.3
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 2.6e-101 373.2 423 62.6
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 2.2e-100 370.2 401 54.4
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.1e-99 367.9 397 53.7
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.9e-99 367.1 410 62.4
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.2e-99 366.3 410 62.2
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.2e-98 364.4 355 64.5
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 2.1e-98 363.6 382 53.7
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 7.8e-98 361.7 355 53.8
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 5.1e-97 359.0 320 63.4
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 1.1e-96 357.8 407 59.0
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-96 357.8 407 58.2
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 3.3e-96 356.3 351 61.5
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 2.8e-95 353.2 309 71.5
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.1e-95 351.7 407 55.0
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-94 350.9 424 56.1
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.1e-91 341.3 365 65.5
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 7.1e-91 338.6 365 55.3
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 4.6e-90 335.9 352 60.8
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-86 324.3 175 85.1
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 2.4e-83 313.5 332 56.0
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 2.3e-81 307.0 160 86.2
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.5e-80 303.5 388 46.1
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 3.3e-80 303.1 344 47.1
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.1e-79 300.4 333 48.9
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 7.6e-77 292.0 445 42.5
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.7e-76 290.8 360 47.5
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.8e-73 280.8 345 44.6
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.4e-70 271.2 327 44.3
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 4.0e-70 269.6 379 53.0
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 8.2e-63 245.4 131 84.0
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 2.3e-57 227.3 299 61.5
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 3.3e-56 223.4 116 87.1
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 4.3e-56 223.0 292 61.6
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 3.2e-51 206.8 114 81.6
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 2.7e-50 203.8 303 61.1
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.4e-46 191.4 113 73.5
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.7e-45 185.7 174 52.3
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 4.4e-40 169.9 92 80.4
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 1.3e-39 168.3 264 44.3
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 8.2e-39 165.6 347 32.6
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 9.7e-32 142.1 163 51.5
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 3.0e-25 120.6 162 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.3e-23 115.2 271 30.6
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.8e-22 111.3 82 70.7
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.2e-13 82.0 39 92.3
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.7e-12 78.2 68 54.4


User provided reference genes

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