Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.1e-207 724.9 377 100.0
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 1.2e-198 696.4 377 95.2
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 2.0e-198 695.7 377 95.2
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 2.2e-197 692.2 375 95.2
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 6.5e-197 690.6 377 95.0
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 3.6e-195 684.9 377 94.7
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 4.6e-195 684.5 373 94.6
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 6.1e-195 684.1 377 94.2
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 1.5e-193 679.5 377 93.4
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 3.3e-193 678.3 378 93.4
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 9.7e-193 676.8 378 93.7
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 2.8e-192 675.2 378 93.9
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 4.8e-192 674.5 378 93.4
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 3.1e-191 671.8 378 93.1
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 3.1e-191 671.8 378 93.1
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 6.3e-184 647.5 395 86.1
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 9.1e-175 617.1 377 84.4
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 8.6e-157 557.4 379 75.7
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.1e-156 557.0 379 75.5
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 1.5e-156 556.6 379 76.3
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 1.4e-154 550.1 377 75.9
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 5.2e-154 548.1 379 75.5
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 5.7e-153 544.7 379 74.7
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.3e-152 543.5 377 73.7
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 2.2e-152 542.7 354 77.1
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 2.9e-152 542.3 407 70.5
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 6.4e-152 541.2 379 73.9
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 2.0e-150 536.2 379 73.1
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 2.7e-150 535.8 380 73.7
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 3.5e-150 535.4 379 73.9
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 3.5e-150 535.4 379 73.1
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 4.6e-150 535.0 380 72.6
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 2.3e-149 532.7 380 71.8
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 6.6e-149 531.2 380 71.8
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 8.6e-149 530.8 378 71.4
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 8.6e-149 530.8 379 71.8
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 2.8e-147 525.8 380 71.1
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 4.7e-147 525.0 379 71.8
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 6.2e-147 524.6 379 71.0
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 1.0e-146 523.9 380 71.8
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 1.0e-146 523.9 379 72.0
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 1.0e-146 523.9 380 70.8
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 2.3e-146 522.7 399 69.4
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 8.9e-146 520.8 380 69.7
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 1.5e-145 520.0 380 70.5
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.5e-145 520.0 370 73.8
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 2.0e-145 519.6 381 70.3
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 2.0e-145 519.6 379 70.7
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 2.6e-145 519.2 379 71.0
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 5.8e-145 518.1 379 69.4
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 1.3e-144 516.9 379 71.0
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 2.9e-144 515.8 377 70.0
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 3.7e-144 515.4 380 71.3
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 6.4e-144 514.6 388 70.6
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 6.4e-144 514.6 378 69.6
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 6.4e-144 514.6 383 71.0
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 3.2e-143 512.3 277 97.5
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 2.7e-142 509.2 377 69.5
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 2.7e-142 509.2 382 69.4
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 6.0e-142 508.1 379 67.8
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 1.3e-141 506.9 409 65.5
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 1.3e-141 506.9 403 66.3
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 1.3e-141 506.9 379 68.9
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 1.1e-140 503.8 379 68.3
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 2.5e-140 502.7 389 67.4
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 4.3e-140 501.9 385 69.4
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 4.3e-140 501.9 378 67.2
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 2.8e-139 499.2 379 67.5
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 1.1e-138 497.3 380 67.4
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 1.8e-138 496.5 432 62.7
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 1.8e-138 496.5 379 66.2
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 3.1e-138 495.7 380 66.1
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-138 495.7 379 68.1
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 5.2e-138 495.0 378 66.7
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 5.2e-138 495.0 434 62.4
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 5.8e-137 491.5 383 66.6
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 7.5e-137 491.1 380 65.8
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 2.9e-136 489.2 404 64.1
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 9.2e-135 484.2 380 68.4
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 1.2e-134 483.8 432 61.6
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 2.1e-134 483.0 380 66.3
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 1.0e-133 480.7 377 67.1
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 1.7e-133 479.9 378 64.6
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 8.6e-133 477.6 384 65.9
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 8.6e-133 477.6 379 64.9
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 7.3e-132 474.6 362 70.2
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 9.5e-132 474.2 410 62.7
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 5.2e-130 468.4 383 64.0
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 5.2e-130 468.4 386 64.2
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 2.6e-129 466.1 382 63.6
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 1.9e-127 459.9 324 73.5
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 2.4e-127 459.5 379 63.9
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.2e-123 447.2 379 64.1
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 4.7e-123 445.3 378 62.2
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 1.8e-122 443.4 388 61.6
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 2.0e-121 439.9 459 54.0
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 6.4e-120 434.9 382 60.5
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 3.5e-118 429.1 331 65.9
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 5.1e-117 425.2 383 59.5
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.1e-111 407.5 418 56.0
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.4e-111 406.4 382 58.4
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 3.5e-110 402.5 382 57.1
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 7.9e-110 401.4 276 75.4
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 7.9e-110 401.4 385 56.1
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 4.8e-99 365.5 387 53.7
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.8e-77 293.9 158 96.8
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 4.4e-76 289.3 158 96.2
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 4.8e-75 285.8 158 94.9
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 8.5e-72 275.0 417 41.7
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 6.7e-69 265.4 245 56.7
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 8.5e-64 248.4 158 85.4
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 1.1e-63 248.1 460 36.7
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 5.2e-53 212.6 341 41.6
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 8.0e-46 188.7 148 68.2
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 8.6e-40 168.7 163 51.5
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.6e-38 164.5 129 64.3
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 8.9e-37 158.7 86 95.3
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.3e-35 154.8 126 64.3
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 2.3e-29 134.0 108 64.8
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 3.4e-28 130.2 102 59.8
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 5.0e-24 116.3 103 54.4
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.9e-23 114.4 90 64.4
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 1.2e-12 78.6 125 43.2
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 3.2e-10 70.5 163 31.9
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 3.9e-08 63.5 39 79.5
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 5.1e-08 63.2 115 37.4
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 8.6e-08 62.4 39 76.9


User provided reference genes

Program Settings