Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 6.3e-193 677.6 416 100.0
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.6e-178 629.0 438 89.5
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.8e-161 572.4 432 84.5
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.5e-159 565.5 435 85.5
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.0e-158 563.9 448 78.8
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.9e-157 559.7 425 83.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.4e-155 553.5 420 84.0
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.0e-154 549.7 432 83.6
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.7e-153 546.6 420 82.6
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.4e-152 543.5 415 80.7
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 5.6e-149 531.6 426 81.5
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.8e-148 529.3 421 83.6
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 2.3e-147 526.2 421 83.1
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 2.3e-147 526.2 421 83.1
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 8.9e-147 524.2 413 83.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 2.0e-146 523.1 327 86.5
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 2.6e-146 522.7 413 74.6
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 6.8e-139 498.0 408 77.7
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 2.0e-138 496.5 410 79.0
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.6e-124 449.1 309 81.6
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.9e-120 436.8 416 72.4
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.0e-118 429.5 326 68.1
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 7.3e-117 424.9 425 63.1
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 2.8e-116 422.9 319 68.7
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 6.2e-116 421.8 333 67.0
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 1.4e-115 420.6 326 66.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.4e-115 419.9 326 67.2
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.4e-115 419.9 326 66.0
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 8.9e-115 417.9 319 68.3
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.2e-114 417.5 335 67.5
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.6e-114 416.4 334 67.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 7.6e-114 414.8 329 66.6
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 3.8e-113 412.5 334 68.0
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.9e-113 412.1 316 68.0
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 8.4e-113 411.4 330 65.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 8.4e-113 411.4 333 64.6
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.1e-112 411.0 326 65.6
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.9e-112 410.2 326 64.4
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.2e-111 407.5 344 63.4
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 3.5e-111 406.0 326 65.0
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 3.0e-110 402.9 334 63.2
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 5.1e-110 402.1 332 64.5
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 8.7e-110 401.4 330 65.5
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.1e-109 401.0 332 63.6
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.5e-109 400.6 331 64.4
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 4.3e-109 399.1 331 63.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 9.6e-109 397.9 328 64.3
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.3e-108 397.5 328 64.0
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.3e-108 397.5 328 65.2
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 3.6e-108 396.0 326 65.0
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 4.8e-108 395.6 323 64.4
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 6.2e-108 395.2 348 60.6
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.4e-107 394.0 330 64.2
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.8e-107 393.7 330 63.9
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 2.4e-107 393.3 330 64.2
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 6.9e-107 391.7 323 63.2
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.5e-106 390.6 333 64.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 2.0e-106 390.2 329 63.2
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.4e-106 389.4 329 63.2
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 4.5e-106 389.0 320 64.4
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 7.6e-106 388.3 325 63.1
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.3e-105 387.5 333 63.1
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.7e-105 387.1 313 64.9
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.7e-105 387.1 329 62.6
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.2e-105 386.7 322 64.6
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 2.2e-105 386.7 333 63.4
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 2.9e-105 386.3 352 59.1
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.8e-105 386.0 325 64.0
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 8.4e-105 384.8 329 61.1
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.1e-104 384.4 323 63.2
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.2e-104 382.9 330 62.1
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 3.2e-104 382.9 327 63.0
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 4.2e-104 382.5 332 62.3
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 7.1e-104 381.7 324 61.1
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 1.2e-103 380.9 325 61.2
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.2e-103 380.9 345 60.6
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 2.1e-103 380.2 331 62.5
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 6.0e-103 378.6 331 61.3
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 6.0e-103 378.6 314 64.0
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 6.0e-103 378.6 326 59.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.8e-102 377.1 323 61.9
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.8e-102 377.1 332 61.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.3e-102 376.7 366 56.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 3.9e-102 375.9 349 58.5
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 5.1e-102 375.6 330 62.1
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 6.9e-99 365.2 333 58.0
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 9.0e-99 364.8 355 56.3
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.6e-98 363.2 308 62.0
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 2.6e-98 363.2 311 61.7
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 7.6e-98 361.7 334 56.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.7e-97 360.5 308 61.7
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.1e-96 357.8 315 60.0
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 7.1e-96 355.1 282 64.5
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 7.1e-96 355.1 334 56.9
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 3.5e-95 352.8 287 63.1
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 7.9e-95 351.7 333 57.4
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 6.7e-94 348.6 332 56.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 6.7e-94 348.6 358 55.6
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 2.5e-93 346.7 314 59.2
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.2e-92 342.0 437 47.6
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 8.1e-92 341.7 367 53.1
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.0e-91 339.3 302 59.9
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.2e-89 333.6 288 61.8
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 3.2e-88 329.7 294 59.5
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 7.1e-88 328.6 321 57.0
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.2e-87 327.8 294 58.2
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.5e-85 320.9 294 57.5
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 5.7e-85 318.9 310 56.1
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 4.2e-80 302.8 340 53.5
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 5.5e-80 302.4 330 51.8
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 4.6e-71 272.7 290 54.5
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 2.4e-67 260.4 222 61.7
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 4.5e-66 256.1 225 60.4
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 5.2e-62 242.7 338 40.5
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 7.4e-61 238.8 215 62.3
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.2e-57 227.3 161 78.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.9e-56 224.2 326 40.5
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 3.2e-48 196.8 293 43.0
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 2.3e-46 190.7 251 57.4
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.0e-41 175.3 139 66.9
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-41 174.9 154 61.0
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 3.2e-40 170.2 155 60.6
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 4.0e-38 163.3 168 56.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 7.5e-37 159.1 112 75.9
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.3e-36 158.3 386 32.1
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.1e-35 155.2 117 63.2
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.6e-34 151.4 255 37.6
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 5.9e-34 149.4 361 31.9
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 8.6e-25 119.0 98 62.2
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 2.5e-24 117.5 203 40.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 5.6e-24 116.3 91 68.1
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.8e-22 111.3 170 40.6
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.3e-20 105.1 182 38.5
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.9e-20 103.2 83 62.7
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-18 98.6 68 77.9
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.7e-18 97.4 68 69.1
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 4.6e-18 96.7 68 69.1
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.6e-17 92.4 135 46.7
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 4.3e-16 90.1 97 48.5
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.2e-15 88.6 176 34.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.6e-15 88.2 62 69.4
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 3.6e-15 87.0 135 43.7
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 3.6e-15 87.0 68 69.1
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.6e-15 87.0 62 69.4
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 6.2e-15 86.3 60 70.0
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 1.1e-14 85.5 330 27.3
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-14 85.1 61 67.2
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 5.8e-13 79.7 367 27.0
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-11 75.5 97 45.4
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.6e-10 70.1 89 49.4
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 2.3e-09 67.8 112 32.1
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.1e-07 61.2 125 38.4
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 2.4e-06 57.8 38 71.1
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 2.4e-06 57.8 61 52.5


User provided reference genes

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