Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 7.2e-52 206.8 96 100.0
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 7.2e-52 206.8 96 100.0
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 8.9e-42 173.3 95 85.3
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 4.4e-41 171.0 95 83.2
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.3e-40 169.5 96 85.4
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.7e-40 169.1 95 83.2
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 6.3e-40 167.2 95 81.1
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.4e-39 166.0 96 83.3
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-39 165.2 96 82.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.0e-34 149.8 95 73.7
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 2.3e-34 148.7 96 76.0
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 4.0e-34 147.9 95 73.7
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 4.0e-34 147.9 95 73.7
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 4.0e-34 147.9 95 73.7
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.7e-32 141.4 95 72.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 4.6e-30 134.4 95 71.6
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 3.0e-29 131.7 95 68.4
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.7e-27 124.4 98 61.2
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 4.7e-27 124.4 98 62.2
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.0e-26 121.3 97 61.9
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.0e-26 121.3 97 61.9
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.0e-26 121.3 97 61.9
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.5e-25 119.4 95 60.0
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 7.5e-25 117.1 95 61.1
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.7e-24 114.8 99 57.6
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.4e-24 114.0 99 57.6
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-23 112.8 99 56.6
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.5e-22 108.2 94 56.4
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.0e-21 106.7 100 56.0
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 5.1e-21 104.4 96 54.2
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 6.6e-21 104.0 95 56.8
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.3e-20 101.7 96 56.2
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 4.3e-20 101.3 93 57.0
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 5.6e-20 100.9 95 50.5
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 5.6e-20 100.9 93 55.9
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 7.3e-20 100.5 95 55.8
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 7.3e-20 100.5 97 57.7
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 7.3e-20 100.5 96 56.2
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.2e-19 99.8 93 52.7
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.6e-19 99.4 93 54.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.6e-19 99.4 98 53.1
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.1e-19 99.0 96 55.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.7e-19 97.8 100 49.0
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.7e-19 97.8 100 49.0
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 8.1e-19 97.1 95 53.7
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 2.3e-18 95.5 94 53.2
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 3.1e-18 95.1 98 56.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 5.2e-18 94.4 102 54.9
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 6.8e-18 94.0 94 52.1
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 8.9e-18 93.6 93 51.6
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.2e-17 93.2 98 54.1
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.6e-17 92.0 98 50.0
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.6e-17 92.0 101 50.5
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.6e-17 92.0 94 52.1
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.4e-17 91.7 94 52.1
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.4e-17 91.7 94 52.1
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.4e-17 91.7 94 52.1
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.4e-17 91.7 94 52.1
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 4.4e-17 91.3 95 46.3
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 7.6e-17 90.5 65 64.6
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.6e-17 90.5 94 51.1
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 9.9e-17 90.1 65 63.1
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.2e-16 89.0 101 49.5
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 2.9e-16 88.6 105 48.6
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.9e-16 88.6 99 51.5
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.4e-15 84.3 93 50.5
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 5.4e-15 84.3 96 47.9
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 9.2e-15 83.6 103 45.6
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.2e-14 83.2 98 46.9
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.1e-14 82.4 70 61.4
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.1e-14 82.4 98 45.9
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.7e-14 82.0 70 55.7
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.7e-14 82.0 65 61.5
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.5e-14 81.6 95 47.4
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 3.5e-14 81.6 104 46.2
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.5e-14 81.6 102 44.1
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 4.6e-14 81.3 98 46.9
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 4.6e-14 81.3 111 42.3
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 7.8e-14 80.5 100 45.0
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 7.8e-14 80.5 100 45.0
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.7e-13 79.3 65 60.0
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 2.3e-13 79.0 96 46.9
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.0e-13 78.6 66 62.1
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 6.6e-13 77.4 70 60.0
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.6e-13 77.0 76 55.3
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.9e-12 75.9 75 50.7
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.3e-12 75.1 101 42.6
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 4.3e-12 74.7 94 44.7
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 5.6e-12 74.3 98 43.9
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.3e-12 73.9 56 64.3
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.6e-11 72.8 64 54.7
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.8e-11 72.0 61 62.3
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.8e-11 72.0 75 49.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.1e-10 70.1 96 44.8
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.1e-10 70.1 97 42.3
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-10 69.7 66 59.1
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.4e-10 68.9 102 36.3
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.4e-10 68.9 99 42.4
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.4e-10 68.9 99 42.4
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 2.4e-10 68.9 99 43.4
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 5.2e-10 67.8 65 58.5
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 6.8e-10 67.4 103 40.8
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.9e-10 67.0 101 42.6
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.2e-09 66.6 103 37.9
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 7.6e-09 63.9 43 69.8
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 7.6e-09 63.9 47 63.8
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 9.9e-09 63.5 61 55.7
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.3e-08 63.2 73 49.3
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 2.2e-08 62.4 45 62.2
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.2e-08 62.4 77 46.8
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 2.2e-08 62.4 43 65.1
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.9e-08 62.0 70 48.6
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.9e-08 62.0 97 40.2
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.1e-06 55.8 48 52.1
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 4.6e-06 54.7 38 68.4


User provided reference genes

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