Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G37500 Arabidopsis lyrata HOM05D007687 ORTHO05D009692 5.5e-142 507.7 265 100.0
AT5G60880 Arabidopsis thaliana HOM05D007687 ORTHO05D009692 1.0e-127 460.3 265 92.5
Thhalv10004801m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 1.7e-106 389.8 265 80.8
Sp2g24190 Schrenkiella parvula HOM05D007687 ORTHO05D009692 1.2e-101 373.6 270 77.4
BcaNung02611 Brassica carinata HOM05D007687 ORTHO05D009692 2.4e-97 359.4 266 73.7
C07p44640 Brassica napus HOM05D007687 ORTHO05D009692 2.4e-97 359.4 266 73.7
BolC7t44987H Brassica oleracea HOM05D007687 ORTHO05D009692 3.5e-96 355.5 266 72.9
BcaC06g33202 Brassica carinata HOM05D007687 ORTHO05D009692 1.1e-94 350.5 266 71.8
BraA03t13781Z Brassica rapa HOM05D007687 ORTHO05D009692 3.0e-92 342.4 267 70.8
A03p46570 Brassica napus HOM05D007687 ORTHO05D009692 9.5e-86 320.9 266 67.3
CARHR274560 Cardamine hirsuta HOM05D007687 ORTHO05D009692 1.8e-84 316.6 268 70.9
BcaB04g19894 Brassica carinata HOM05D007687 ORTHO05D009692 1.6e-80 303.5 266 65.0
Carub.0008s2158 Capsella rubella HOM05D007687 ORTHO05D009692 2.7e-80 302.8 268 67.5
BcaC04g23476 Brassica carinata HOM05D007687 ORTHO05D009692 3.5e-80 302.4 266 65.8
BraA09t36360Z Brassica rapa HOM05D007687 ORTHO05D009692 1.3e-79 300.4 266 65.4
BolC9t53708H Brassica oleracea HOM05D007687 ORTHO05D009692 1.7e-79 300.1 266 65.4
A09p07100 Brassica napus HOM05D007687 ORTHO05D009692 3.3e-78 295.8 267 64.8
C09p07960 Brassica napus HOM05D007687 ORTHO05D009692 3.1e-76 289.3 266 63.9
Thhalv10015806m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 2.9e-66 256.1 266 57.5
THA.LOC104801051 Tarenaya hassleriana HOM05D007687 ORTHO05D009692 7.3e-54 214.9 271 50.6
Aa31LG11G2410 Aethionema arabicum HOM05D007687 ORTHO05D009692 3.1e-52 209.5 196 61.7
Thecc.03G108300 Theobroma cacao HOM05D007687 ORTHO05D009692 1.5e-30 137.5 292 35.6
Sed0010577 Sechium edule HOM05D007687 ORTHO05D009692 1.6e-29 134.0 297 34.0
QL10p020735 Quercus lobata HOM05D007687 ORTHO05D009692 3.1e-28 129.8 286 36.4
Prupe.5G209900 Prunus persica HOM05D007687 ORTHO05D009692 1.7e-26 124.0 269 36.1
Duzib205G1319 Durio zibethinus HOM05D007687 ORTHO05D009692 1.4e-25 120.9 273 34.1
Duzib068G1012 Durio zibethinus HOM05D007687 ORTHO05D009692 5.5e-25 119.0 288 31.9
Duzib084G0111 Durio zibethinus HOM05D007687 ORTHO05D009692 1.2e-24 117.9 282 34.4
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 2.7e-24 116.7 273 33.3
MD14G1216500 Malus domestica HOM05D007687 ORTHO05D009692 2.3e-23 113.6 330 32.4
C02p61170 Brassica napus HOM05D007687 ORTHO05D033574 8.7e-23 111.7 249 38.2
BolC2t12162H Brassica oleracea HOM05D007687 ORTHO05D033574 8.7e-23 111.7 249 38.2
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 2.5e-22 110.2 297 30.6
Potri.015G048600 Populus trichocarpa HOM05D007687 ORTHO05D009692 7.4e-22 108.6 283 35.0
Manes.14G089000 Manihot esculenta HOM05D007687 ORTHO05D009692 2.8e-21 106.7 286 32.5
Nn4g23535 Nelumbo nucifera HOM05D007687 ORTHO05D009692 8.2e-21 105.1 280 30.0
Ciclev10024235m.g Citrus clementina HOM05D007687 ORTHO05D009692 1.2e-19 101.3 261 29.5
Nitab4.5_0002467g0050 Nicotiana tabacum HOM05D007687 ORTHO05D009692 3.8e-18 96.3 285 30.9
Peaxi162Scf00017g03282 Petunia axillaris HOM05D007687 ORTHO05D009692 1.4e-17 94.4 288 29.9
FvH4_5g13402 Fragaria vesca HOM05D007687 ORTHO05D009692 2.5e-17 93.6 294 32.7
FAN18G0959 Fragaria x ananassa HOM05D007687 ORTHO05D009692 2.5e-17 93.6 294 32.7
Lj4g0013896 Lotus japonicus HOM05D007687 ORTHO05D009692 2.7e-16 90.1 259 29.7
Oeu044771.1 Olea europaea HOM05D007687 ORTHO05D009692 6.1e-16 89.0 278 30.2
CiPaw.15G114100 Carya illinoinensis HOM05D007687 ORTHO05D009692 3.0e-15 86.7 214 32.7
FAN08G0723 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.5e-14 84.3 306 30.4
BraA02t09067Z Brassica rapa HOM05D007687 ORTHO05D033574 1.3e-13 81.3 73 69.9
Sabra15G0078700 Salix brachista HOM05D007687 ORTHO05D009692 1.3e-13 81.3 293 31.4
VMungo1215G2041 Vigna mungo HOM05D007687 ORTHO05D009692 1.7e-13 80.9 265 30.6
Atru.chr4.1593 Acer truncatum HOM05D007687 ORTHO05D009692 2.2e-13 80.5 242 31.0
ClCG04G011570 Citrullus lanatus HOM05D007687 ORTHO05D009692 2.2e-13 80.5 242 31.4
CAN.G982.38 Capsicum annuum HOM05D007687 ORTHO05D009692 2.8e-13 80.1 294 26.5
Nitab4.5_0005994g0030 Nicotiana tabacum HOM05D007687 ORTHO05D009692 1.2e-11 74.7 269 27.9
TWI60G1328 Tripterygium wilfordii HOM05D007687 ORTHO05D009692 1.2e-11 74.7 248 25.8
SGA_v2.0_scaffold105G30431 Striga asiatica HOM05D007687 ORTHO05D009692 2.0e-11 73.9 264 28.4
Gorai.006G268500 Gossypium raimondii HOM05D007687 ORTHO05D009692 7.7e-11 72.0 250 28.4
Cfa016835 Carpinus fangiana HOM05D007687 ORTHO05D009692 1.0e-10 71.6 160 37.5
Dinv07975 Davidia involucrata HOM05D007687 ORTHO05D009692 1.7e-10 70.9 181 31.5
Glyma.17G081600 Glycine max HOM05D007687 ORTHO05D009692 3.8e-10 69.7 150 34.0
Medtr2g461550 Medicago truncatula HOM05D007687 ORTHO05D009692 6.5e-10 68.9 178 36.0
Phvul.003G182300 Phaseolus vulgaris HOM05D007687 ORTHO05D009692 8.5e-10 68.6 208 29.3
Actinidia10442 Actinidia chinensis HOM05D007687 ORTHO05D009692 1.1e-09 68.2 292 27.4
Cc04_g08290 Coffea canephora HOM05D007687 ORTHO05D009692 1.1e-09 68.2 276 25.4
Gohir.A09G243800 Gossypium hirsutum HOM05D007687 ORTHO05D009692 1.9e-09 67.4 246 29.7
Sopen03g033850 Solanum pennellii HOM05D007687 ORTHO05D009692 1.9e-09 67.4 265 25.3
Solyc03g114770.3 Solanum lycopersicum HOM05D007687 ORTHO05D009692 3.2e-09 66.6 265 25.3
CsaV3_1G006250 Cucumis sativus L. HOM05D007687 ORTHO05D009692 5.5e-09 65.9 198 31.3
Dinv17458 Davidia involucrata HOM05D007687 ORTHO05D009692 7.2e-09 65.5 166 31.9
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 1.2e-08 64.7 158 36.1
CANSAT56G0292 Cannabis sativa HOM05D007687 ORTHO05D009692 1.8e-07 60.8 174 34.5
CANSAT56G1485 Cannabis sativa HOM05D007687 ORTHO05D009692 1.8e-07 60.8 174 32.8
Lj5A137T61 Lonicera japonica HOM05D007687 ORTHO05D009692 1.8e-07 60.8 253 29.6
A02p41240 Brassica napus HOM05D007687 ORTHO05D009692 2.3e-07 60.5 29 86.2
Gorai.006G268600 Gossypium raimondii HOM05D007687 ORTHO05D009692 3.9e-07 59.7 269 25.7
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 8.8e-07 58.5 162 34.0
Gohir.D09G244550 Gossypium hirsutum HOM05D007687 ORTHO05D009692 1.1e-06 58.2 274 25.2
Aqoxy7G00617 Aquilegia oxysepala HOM05D035011 ORTHO05D031291 2.0e-06 57.4 170 27.1
Manes.06G080900 Manihot esculenta HOM05D007687 ORTHO05D009692 3.3e-06 56.6 213 29.1
PSO063G2070 Papaver somniferum HOM05D035011 ORTHO05D031291 5.7e-06 55.8 245 26.5
FAN13G2354 Fragaria x ananassa HOM05D007687 ORTHO05D009692 9.7e-06 55.1 254 28.3


User provided reference genes

Program Settings