Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.3e-190 667.2 357 100.0
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 4.9e-162 574.7 391 83.6
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 6.6e-159 564.3 375 84.3
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.1e-132 475.7 379 74.4
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 4.5e-131 471.9 370 73.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.0e-130 470.7 374 72.7
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-130 470.7 374 72.7
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.0e-130 470.7 374 72.7
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.6e-125 453.4 367 72.8
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 9.1e-124 447.6 367 72.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 9.4e-121 437.6 348 73.6
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-110 404.1 402 62.9
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.8e-109 399.4 409 62.6
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 4.4e-102 375.6 375 63.2
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.4e-95 354.0 311 68.2
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.5e-91 339.3 185 100.0
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-79 300.8 327 60.2
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.1e-76 289.3 296 60.8
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.1e-71 273.1 295 62.4
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 2.0e-62 243.8 272 61.4
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.7e-61 240.7 292 50.3
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.2e-61 240.4 292 50.3
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 3.7e-61 239.6 295 52.5
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 8.3e-61 238.4 187 69.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 8.3e-61 238.4 390 42.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 7.1e-60 235.3 293 51.9
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 7.1e-60 235.3 194 67.0
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.2e-59 234.6 194 67.5
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.6e-59 234.2 225 61.3
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.1e-59 233.8 290 50.0
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.7e-59 233.4 194 67.0
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.0e-58 231.5 196 64.8
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.3e-58 231.1 187 66.8
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.7e-58 230.7 306 49.3
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.0e-58 229.9 229 60.3
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 3.0e-58 229.9 195 65.1
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 5.1e-58 229.2 196 64.3
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 6.6e-58 228.8 200 64.0
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 5.6e-57 225.7 191 64.9
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 7.3e-57 225.3 260 53.1
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.3e-57 225.3 245 54.3
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 7.3e-57 225.3 292 49.7
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 7.3e-57 225.3 342 44.4
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.2e-56 224.6 327 45.0
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 4.7e-56 222.6 194 59.3
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 8.1e-56 221.9 300 45.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.1e-55 221.5 288 50.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.1e-55 221.5 191 61.8
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 5.2e-55 219.2 193 62.2
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 6.8e-55 218.8 184 65.2
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 8.9e-55 218.4 186 62.4
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.9e-55 218.4 348 44.3
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.5e-54 217.6 344 43.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.5e-54 217.6 300 47.7
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.0e-54 217.2 184 64.7
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.6e-54 216.9 191 62.3
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 5.8e-54 215.7 316 44.6
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 5.8e-54 215.7 378 42.3
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.7e-53 214.2 304 46.1
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.8e-53 213.0 231 55.8
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 4.9e-53 212.6 184 63.6
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 6.4e-53 212.2 330 46.1
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 8.4e-53 211.8 184 63.0
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.4e-52 211.1 332 44.0
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.9e-52 210.7 325 44.3
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.9e-52 210.7 236 53.4
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 7.1e-52 208.8 344 41.9
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 9.2e-52 208.4 197 58.9
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-51 208.0 229 53.7
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.6e-51 207.6 235 52.3
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.6e-51 207.6 167 70.1
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 2.1e-51 207.2 223 53.8
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.1e-51 207.2 340 43.2
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.5e-51 206.5 261 48.7
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 3.5e-51 206.5 295 47.1
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 4.6e-51 206.1 194 59.3
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 6.0e-51 205.7 366 41.0
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.8e-51 205.3 321 43.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.0e-50 204.9 186 61.3
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 3.9e-50 203.0 194 57.7
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 6.6e-50 202.2 181 61.3
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 6.6e-50 202.2 194 58.2
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.6e-50 202.2 293 45.7
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.5e-49 201.1 334 44.3
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.3e-49 199.9 215 53.5
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.8e-48 196.8 224 52.7
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.1e-47 194.9 233 51.5
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.4e-47 194.5 187 58.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.4e-47 194.5 191 56.5
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.9e-47 192.2 188 58.5
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.2e-46 191.4 251 51.0
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 2.0e-46 190.7 201 54.2
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 2.6e-46 190.3 212 52.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 4.4e-46 189.5 196 54.6
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.7e-45 187.6 193 54.9
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 5.4e-44 182.6 363 36.6
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 7.1e-44 182.2 346 37.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 7.1e-44 182.2 192 51.0
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.2e-43 181.4 254 50.8
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.2e-43 181.4 254 50.8
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.1e-41 174.9 225 51.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.5e-41 173.7 322 38.8
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.3e-40 171.4 227 48.9
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.1e-39 168.3 185 51.4
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 1.5e-38 164.5 133 71.4
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 5.8e-38 162.5 377 35.0
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 1.4e-36 157.9 126 73.0
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 2.4e-36 157.1 187 50.8
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.4e-36 157.1 181 48.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-35 154.8 218 47.2
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.2e-35 154.8 184 48.9
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 2.1e-35 154.1 182 51.6
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 8.7e-34 148.7 193 48.7
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.3e-33 146.4 287 38.0
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 4.3e-33 146.4 266 41.0
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.3e-32 144.8 298 37.9
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.6e-32 144.4 280 36.1
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 4.8e-32 142.9 275 38.9
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.1e-31 140.2 186 43.5
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.0e-30 137.5 204 43.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.4e-30 136.7 86 82.6
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.9e-29 133.7 185 45.9
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.4e-28 131.3 250 42.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.1e-28 129.0 225 41.8
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 6.0e-27 125.9 128 59.4
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 2.3e-26 124.0 121 62.8
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 3.0e-26 123.6 121 62.0
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.5e-25 121.3 193 43.0
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 7.4e-25 119.0 182 41.2
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.4e-23 114.0 172 48.3
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 3.1e-23 113.6 121 52.9
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 3.2e-20 103.6 318 29.9
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.6e-19 101.3 117 49.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 6.0e-19 99.4 92 58.7
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.8e-18 97.8 149 47.7
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.0e-18 97.1 83 55.4
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 3.0e-18 97.1 83 61.4
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.1e-18 96.3 195 40.0
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 9.7e-17 92.0 82 57.3
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.3e-16 91.7 87 63.2
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.2e-16 90.9 79 54.4
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.8e-16 89.7 182 37.4
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.7e-13 81.3 117 46.2
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 3.8e-13 80.1 172 31.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 8.5e-13 79.0 112 42.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 7.2e-12 75.9 156 32.1
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 2.3e-10 70.9 62 61.3
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 5.1e-10 69.7 62 62.9
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 1.1e-09 68.6 62 61.3
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.4e-07 61.6 163 30.7
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.8e-07 61.2 47 57.4
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 4.1e-07 60.1 99 36.4
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 5.3e-07 59.7 55 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 4.5e-06 56.6 73 43.8


User provided reference genes

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