Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 0.0e+00 1282.7 706 100.0
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 0.0e+00 1135.6 706 89.0
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 0.0e+00 1075.8 710 82.7
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.2e-247 860.1 712 67.1
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 3.1e-232 808.9 717 64.7
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 3.1e-232 808.9 717 64.7
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.0e-231 806.2 717 64.7
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 2.4e-229 799.3 718 64.6
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.1e-226 790.4 719 64.5
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.9e-226 789.6 719 64.4
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.6e-225 786.6 725 64.1
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 5.8e-223 778.1 713 63.8
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 9.2e-221 770.8 722 63.2
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 8.6e-219 764.2 720 62.8
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.5e-210 736.1 756 57.7
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 3.6e-209 732.3 723 59.8
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 5.8e-207 724.9 583 68.8
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 7.7e-167 591.7 493 68.0
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.3e-160 568.9 713 49.9
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 7.2e-149 531.9 311 84.9
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.4e-128 464.5 353 63.2
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 2.7e-127 460.3 438 56.4
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.5e-125 454.5 501 50.9
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 3.3e-125 453.4 675 42.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.3e-125 453.0 366 60.9
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 7.3e-125 452.2 366 60.4
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 2.8e-124 450.3 627 43.7
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 4.7e-124 449.5 649 42.7
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.0e-123 448.4 621 45.2
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.4e-123 448.0 344 63.1
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.4e-123 448.0 420 55.5
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 5.2e-123 446.0 648 43.2
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 6.8e-123 445.7 416 55.3
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.2e-122 444.9 648 42.1
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 4.4e-122 443.0 778 40.6
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.9e-120 437.6 366 59.0
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.9e-120 437.6 366 59.3
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 1.9e-120 437.6 368 59.5
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.9e-120 437.6 630 41.7
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 2.4e-120 437.2 371 58.5
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.2e-119 434.9 366 59.0
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.6e-119 434.5 514 47.7
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 7.8e-119 432.2 323 69.7
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 3.0e-118 430.3 722 41.4
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.1e-117 428.3 385 55.8
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.9e-117 427.6 426 53.1
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 5.6e-117 426.0 344 59.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 7.3e-117 425.6 353 60.1
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 2.1e-116 424.1 402 56.0
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 2.1e-116 424.1 401 55.6
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 3.6e-116 423.3 402 55.5
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 8.1e-116 422.2 353 59.5
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 6.8e-115 419.1 641 40.7
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 2.6e-114 417.2 364 55.8
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 3.4e-114 416.8 383 57.7
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.3e-113 414.8 409 55.0
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 6.4e-113 412.5 352 59.4
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.2e-112 410.2 342 59.9
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.1e-112 409.8 434 51.2
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 5.4e-112 409.5 405 51.6
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 9.2e-112 408.7 344 59.9
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 2.7e-111 407.1 368 54.9
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 2.7e-111 407.1 342 58.2
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 3.9e-110 403.3 392 53.6
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 3.9e-110 403.3 456 48.9
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 5.1e-110 402.9 494 46.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 8.6e-110 402.1 422 51.7
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 4.3e-109 399.8 320 60.9
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 4.3e-109 399.8 343 58.9
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 4.3e-109 399.8 358 56.4
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 9.5e-109 398.7 342 59.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.2e-108 398.3 344 57.6
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 4.7e-108 396.4 344 58.1
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 6.2e-108 396.0 476 47.1
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 8.1e-108 395.6 519 44.1
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 3.1e-107 393.7 409 50.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 4.0e-107 393.3 369 53.1
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 4.0e-107 393.3 376 53.5
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 5.2e-107 392.9 342 56.4
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 6.8e-107 392.5 443 49.7
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 8.9e-107 392.1 327 56.9
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.2e-106 391.7 400 51.8
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 5.8e-106 389.4 408 50.5
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 5.8e-106 389.4 372 52.4
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 7.6e-106 389.0 407 50.6
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 7.6e-106 389.0 408 51.7
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.3e-105 388.3 426 50.5
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 2.2e-105 387.5 535 43.7
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 6.4e-105 386.0 318 59.7
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 4.1e-104 383.3 340 55.9
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 9.2e-104 382.1 342 57.6
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 8.6e-102 375.6 443 48.3
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.1e-101 375.2 443 48.3
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 4.7e-100 369.8 422 49.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.4e-99 368.2 487 45.0
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 6.8e-99 365.9 343 54.2
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.2e-98 365.2 335 53.4
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 8.4e-97 359.0 398 50.8
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-95 354.4 389 47.3
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 7.8e-95 352.4 307 57.0
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.5e-93 348.2 519 40.1
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.8e-92 344.0 342 51.8
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.8e-91 341.3 332 53.0
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.6e-90 337.4 341 53.4
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.4e-88 330.9 431 42.5
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 4.6e-87 326.6 364 48.6
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.0e-86 325.5 431 42.7
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.1e-77 295.4 239 63.2
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 3.3e-69 267.3 238 56.7
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 9.0e-67 259.2 208 62.5
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 2.1e-63 248.1 326 42.3
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 3.0e-62 244.2 207 58.9
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 4.3e-61 240.4 370 36.8
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.0e-57 229.2 255 43.1
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.0e-54 219.2 298 41.3
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 5.3e-51 206.8 165 60.6
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 5.9e-50 203.4 397 35.3
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 2.8e-36 157.9 199 42.7
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 5.9e-34 150.2 113 61.1
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 5.2e-30 137.1 139 49.6
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 2.6e-29 134.8 151 46.4
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 2.6e-29 134.8 127 55.1
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.2e-28 131.7 117 55.6
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 1.0e-22 112.8 84 60.7
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.4e-22 112.5 126 44.4
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.8e-22 112.1 162 34.0
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.8e-19 102.1 140 40.0
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 3.3e-16 91.3 180 29.4
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.7e-12 79.0 59 54.2
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.9e-12 78.2 76 47.4
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 4.9e-12 77.4 72 52.8
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.7e-10 71.6 55 60.0
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.7e-10 71.6 55 60.0
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 2.3e-09 68.6 55 60.0


User provided reference genes

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