Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 6.9e-128 460.7 240 100.0
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.1e-112 410.2 240 87.1
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.1e-112 407.1 240 86.7
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.2e-111 406.8 243 87.2
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-102 374.8 240 79.6
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 5.0e-102 374.8 240 79.6
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-101 373.6 240 79.2
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.5e-101 372.5 240 79.6
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 4.2e-101 371.7 240 80.0
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 4.2e-101 371.7 240 79.6
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.2e-95 353.6 233 77.3
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.8e-94 348.6 223 77.1
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.1e-93 347.1 233 75.5
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.1e-93 347.1 232 75.0
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.9e-93 346.3 233 75.5
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.5e-93 345.9 224 76.3
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.3e-93 344.4 234 75.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 7.3e-93 344.4 240 74.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 9.5e-93 344.0 224 76.8
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.2e-92 343.6 234 74.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 2.1e-92 342.8 224 76.3
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 2.1e-92 342.8 224 76.3
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.1e-92 342.8 234 74.8
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.4e-91 340.1 235 72.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.3e-91 339.3 234 74.4
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 4.0e-91 338.6 232 72.4
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.5e-90 334.3 235 72.3
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 9.8e-90 334.0 233 70.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.3e-89 333.6 235 70.2
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.2e-89 332.8 223 73.1
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.9e-89 332.4 223 73.1
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 2.9e-89 332.4 233 70.8
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.8e-88 329.7 224 73.2
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 2.4e-88 329.3 233 70.0
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.4e-88 329.3 234 70.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 3.2e-88 328.9 232 68.5
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 5.4e-88 328.2 233 70.4
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.6e-87 326.6 235 68.1
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.0e-87 326.2 233 70.0
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.7e-87 325.9 233 70.0
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.7e-87 325.9 233 69.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.5e-87 325.5 235 70.2
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 3.5e-87 325.5 233 68.7
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.6e-87 325.1 235 67.7
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 5.9e-87 324.7 235 68.9
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 5.9e-87 324.7 235 68.9
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.9e-87 324.7 233 69.5
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.0e-86 323.9 233 69.1
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 2.3e-86 322.8 234 67.9
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 3.0e-86 322.4 233 69.1
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 3.0e-86 322.4 235 67.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 3.0e-86 322.4 235 69.8
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 3.9e-86 322.0 233 69.1
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 5.0e-86 321.6 235 68.1
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 6.6e-86 321.2 235 67.2
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 8.6e-86 320.9 234 68.4
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 8.6e-86 320.9 233 68.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.5e-85 320.1 233 68.2
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 3.3e-85 318.9 235 68.1
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 5.6e-85 318.2 234 67.1
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 7.3e-85 317.8 233 67.8
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 9.5e-85 317.4 212 75.5
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.2e-84 317.0 235 66.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 4.7e-84 315.1 235 67.2
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 8.0e-84 314.3 234 67.1
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 6.8e-83 311.2 259 60.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 6.8e-83 311.2 232 66.4
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 6.8e-83 311.2 224 67.9
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.8e-83 311.2 226 69.9
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 8.9e-83 310.8 235 67.7
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 8.9e-83 310.8 231 64.9
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.5e-82 310.1 234 64.1
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 3.4e-82 308.9 235 66.4
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.3e-81 307.0 235 66.4
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.7e-81 306.6 234 66.2
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 8.3e-81 304.3 204 73.5
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.4e-80 302.8 280 57.5
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.2e-80 302.4 234 62.4
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 5.4e-80 301.6 206 72.8
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 7.0e-80 301.2 210 72.9
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 7.0e-80 301.2 201 73.1
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 9.2e-80 300.8 224 68.3
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 9.2e-80 300.8 224 63.4
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 65.5
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.3e-78 296.2 230 65.7
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.3e-78 296.2 235 64.3
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.0e-78 295.8 233 63.1
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 3.9e-78 295.4 271 57.2
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.2e-76 290.4 235 65.1
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.8e-76 289.3 235 63.0
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.7e-76 288.5 209 68.9
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 6.2e-76 288.1 204 70.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.2e-76 288.1 214 68.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 6.8e-75 284.6 236 61.9
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.2e-73 279.6 196 69.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 3.7e-73 278.9 229 61.1
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.4e-72 276.9 204 67.2
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.9e-72 276.6 228 62.7
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.2e-72 275.8 221 64.3
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 7.1e-72 274.6 231 62.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 7.1e-72 274.6 231 62.3
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.1e-71 273.1 202 68.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 3.5e-71 272.3 203 68.5
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.5e-71 272.3 187 70.1
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.0e-71 271.6 230 62.2
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.0e-70 270.8 261 55.9
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.0e-70 269.2 224 62.5
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.4e-67 260.4 229 56.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 8.9e-67 257.7 223 56.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.1e-64 250.8 151 88.1
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.1e-64 250.8 166 72.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.1e-64 250.8 224 54.9
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-64 250.4 187 67.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 7.1e-64 248.1 167 72.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.0e-62 244.2 227 55.1
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.1e-62 241.9 185 63.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 6.6e-62 241.5 135 91.9
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.6e-61 238.4 199 63.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 2.1e-60 236.5 217 55.8
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 3.6e-60 235.7 166 72.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 8.1e-60 234.6 226 54.0
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.1e-60 234.6 233 56.2
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 4.2e-56 222.2 147 76.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.0e-54 217.6 204 58.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.3e-54 216.5 237 52.7
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.3e-53 212.6 151 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.3e-46 189.9 199 50.3
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 7.4e-45 184.9 126 73.0
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-44 183.7 150 66.0
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 9.9e-42 174.5 224 50.0
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 6.2e-36 155.2 235 41.3
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.8e-35 153.7 104 76.0
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 5.3e-35 152.1 109 67.9
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.2e-33 146.7 134 56.7
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 4.9e-33 145.6 102 70.6
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.4e-32 144.1 235 38.3
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 5.5e-32 142.1 112 65.2
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 5.7e-29 132.1 262 35.9
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.5e-26 124.0 87 67.8
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 2.6e-26 123.2 211 36.0
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 6.1e-23 112.1 232 31.9
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 5.7e-21 105.5 226 32.7
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 5.7e-21 105.5 226 32.7
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.9e-17 93.2 104 55.8
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-16 91.3 49 85.7
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.9e-16 90.5 74 56.8
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.2e-15 87.8 49 83.7
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 6.7e-14 82.0 203 29.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.3e-12 77.8 81 48.1
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.8e-12 76.6 51 66.7
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 3.7e-12 76.3 56 62.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.8e-12 75.9 53 66.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 3.1e-11 73.2 50 78.0
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 6.9e-11 72.0 51 68.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.3e-09 67.8 43 74.4
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 1.8e-06 57.4 54 51.9
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.8e-06 57.4 44 59.1


User provided reference genes

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