Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 2.4e-170 602.1 300 100.0
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.8e-166 588.6 300 96.7
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 6.6e-160 567.4 301 94.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.3e-152 543.1 306 90.5
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 9.5e-151 537.0 301 90.7
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.8e-149 532.7 305 89.5
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.2e-149 531.2 305 89.2
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.5e-148 529.6 305 89.2
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.5e-148 529.6 305 89.2
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.5e-148 529.6 305 89.2
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.8e-141 506.1 300 83.7
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 4.0e-125 451.8 298 77.9
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.2e-121 440.3 246 91.1
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 5.7e-103 378.3 298 65.4
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 7.4e-103 377.9 296 65.2
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.4e-101 372.9 300 65.0
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.1e-101 372.5 298 65.1
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.1e-101 372.5 304 62.2
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.5e-100 370.2 300 64.3
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.4e-98 363.6 294 63.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.9e-98 363.2 289 63.7
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.2e-98 362.5 289 63.7
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 3.2e-98 362.5 299 63.5
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 5.5e-98 361.7 300 63.7
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.7e-97 359.4 297 62.6
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.6e-97 359.0 289 63.3
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 4.6e-97 358.6 300 62.3
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.0e-96 357.5 297 63.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.8e-96 356.7 297 63.3
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.0e-96 355.9 306 61.8
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 8.8e-96 354.4 298 62.4
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.5e-95 353.6 294 61.6
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.3e-95 352.1 297 62.3
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 2.8e-94 349.4 296 59.5
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-93 347.4 334 56.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.8e-93 346.7 300 59.7
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.8e-93 346.7 295 59.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.8e-93 346.7 295 61.0
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 4.1e-93 345.5 289 62.3
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 5.3e-93 345.1 287 62.7
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 2.6e-92 342.8 306 57.5
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 4.5e-92 342.0 300 58.7
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.3e-91 340.5 295 61.7
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 3.8e-91 339.0 292 58.2
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 6.5e-91 338.2 295 60.7
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.9e-90 336.7 319 56.4
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 4.2e-90 335.5 329 56.5
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 5.5e-90 335.1 292 58.6
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.7e-89 332.8 344 54.4
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.7e-89 332.8 292 58.9
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.7e-89 332.8 292 58.2
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 6.1e-89 331.6 333 53.2
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.8e-88 330.1 300 56.7
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.8e-88 330.1 303 57.4
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.8e-88 330.1 292 58.2
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.8e-88 330.1 298 59.4
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.8e-88 330.1 267 64.4
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.3e-88 329.7 283 59.0
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 3.9e-88 328.9 268 62.7
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 5.1e-88 328.6 282 58.2
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 8.8e-88 327.8 291 57.7
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.1e-87 327.4 256 62.1
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 4.4e-87 325.5 278 61.9
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 5.7e-87 325.1 297 59.3
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 9.7e-87 324.3 319 55.8
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 9.7e-87 324.3 238 64.3
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-86 323.9 290 57.6
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.2e-86 323.2 303 57.1
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 3.7e-86 322.4 305 57.0
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 4.8e-86 322.0 297 57.9
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.8e-85 320.1 314 56.1
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.8e-85 320.1 236 65.3
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.2e-84 317.4 305 56.4
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.6e-84 317.0 295 55.9
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.7e-83 313.5 171 90.1
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 2.9e-83 312.8 266 62.4
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 3.8e-83 312.4 244 62.3
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.5e-83 311.6 240 62.9
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 8.5e-83 311.2 237 62.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.1e-82 310.8 272 60.3
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 4.2e-82 308.9 354 50.6
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 2.1e-81 306.6 295 55.3
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 2.1e-81 306.6 295 55.6
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.4e-80 303.9 238 62.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.8e-80 303.5 214 68.2
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 3.0e-80 302.8 305 53.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 4.0e-80 302.4 302 55.3
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.7e-80 301.6 301 53.5
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 1.1e-79 300.8 234 60.7
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.0e-79 300.1 318 55.0
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 7.5e-79 298.1 288 56.2
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 9.7e-79 297.7 296 55.4
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 6.3e-78 295.0 264 59.8
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 6.3e-78 295.0 264 59.8
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 8.2e-78 294.7 278 57.6
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 8.2e-78 294.7 278 57.6
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 8.2e-78 294.7 278 57.6
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.8e-75 285.8 232 58.2
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 3.2e-74 282.7 235 59.6
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 9.4e-74 281.2 286 54.2
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 5.2e-72 275.4 238 61.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 6.3e-70 268.5 284 51.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.1e-69 266.2 305 48.2
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.5e-68 262.3 239 60.3
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.0e-63 246.9 461 36.7
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 5.7e-63 245.4 241 51.5
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 4.1e-61 239.2 216 55.6
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 9.2e-61 238.0 203 58.6
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.9e-58 230.3 252 52.8
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.8e-56 223.8 240 47.9
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 2.3e-56 223.4 231 49.8
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 7.0e-53 211.8 196 57.1
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.9e-51 206.1 286 42.3
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 9.5e-42 174.9 163 52.8
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 3.6e-41 172.9 167 59.3
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 3.6e-41 172.9 176 54.0
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 5.8e-39 165.6 118 66.1
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 8.3e-38 161.8 217 46.5
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 4.6e-36 156.0 153 48.4
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.7e-35 154.1 112 62.5
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.3e-35 153.7 236 39.4
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 5.2e-32 142.5 115 60.9
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.6e-31 140.2 152 47.4
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 5.8e-31 139.0 89 69.7
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.4e-30 135.2 130 55.4
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 5.4e-29 132.5 75 77.3
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.4e-24 117.9 82 69.5
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.4e-24 117.1 75 74.7
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.4e-24 117.1 75 74.7
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.0e-23 114.0 67 79.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 1.4e-21 107.8 96 54.2
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 4.8e-17 92.8 84 60.7
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 4.8e-17 92.8 62 67.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.4e-16 91.3 135 40.7
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 2.2e-14 84.0 42 83.3
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.9e-14 83.6 62 66.1
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 3.8e-14 83.2 72 58.3
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 6.4e-14 82.4 76 55.3
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.9e-13 80.9 44 77.3
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 1.9e-13 80.9 44 88.6
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 1.9e-13 80.9 44 88.6
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 5.4e-13 79.3 46 76.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.8e-09 66.2 188 28.2
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.4e-08 63.9 197 26.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 5.3e-08 62.8 206 26.7
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.4e-07 60.1 107 39.3
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 9.9e-07 58.5 82 41.5
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 6.4e-06 55.8 257 24.5


User provided reference genes

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