Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.9e-120 434.9 228 100.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.2e-114 414.8 229 96.5
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 7.3e-111 404.1 222 89.6
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 9.6e-111 403.7 225 87.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.2e-108 396.7 225 86.7
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 3.8e-107 391.7 225 84.0
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.4e-106 389.8 225 85.3
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.4e-106 389.0 226 83.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 3.2e-106 388.7 226 83.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.5e-105 385.2 231 81.8
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-103 379.8 226 86.3
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.5e-103 379.8 226 84.5
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.5e-103 379.0 225 84.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-101 372.9 225 85.3
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.8e-101 372.9 225 85.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.4e-98 361.3 221 80.5
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.6e-94 349.7 255 69.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.2e-91 339.3 221 74.7
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 8.4e-91 337.4 181 89.0
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.4e-85 320.1 225 75.6
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.1e-85 318.9 225 74.2
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.6e-81 305.1 221 71.9
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.5e-79 299.3 221 72.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 5.7e-79 298.1 222 66.7
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.3e-78 297.0 222 68.9
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.7e-78 295.4 216 73.1
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 8.2e-78 294.3 221 68.3
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.1e-77 293.9 224 67.4
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.4e-77 293.5 225 63.1
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.4e-77 293.5 224 69.2
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 3.1e-77 292.4 224 68.3
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.3e-77 291.6 226 67.3
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.9e-77 291.2 224 68.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-76 290.4 225 65.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.5e-76 290.0 224 67.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.5e-76 290.0 217 63.1
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.0e-76 289.7 222 69.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.6e-76 289.3 220 69.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 3.4e-76 288.9 222 69.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.4e-76 288.9 224 66.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.9e-76 288.1 229 64.2
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.3e-75 287.0 224 67.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.7e-75 286.6 228 61.4
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.7e-75 286.6 226 65.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.7e-75 286.6 222 65.3
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.7e-75 286.6 222 64.4
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.2e-75 286.2 225 64.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-75 285.8 224 65.6
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 3.8e-75 285.4 225 60.4
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.0e-75 285.0 221 67.9
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 5.0e-75 285.0 227 60.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 6.5e-75 284.6 217 61.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 6.5e-75 284.6 226 64.6
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 6.5e-75 284.6 217 64.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.1e-74 283.9 224 61.6
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.4e-74 283.5 257 57.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 4.2e-74 282.0 230 65.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.5e-74 281.6 222 62.6
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 7.2e-74 281.2 229 65.5
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.2e-73 280.4 224 63.8
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.2e-73 280.4 224 61.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.6e-73 280.0 227 65.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.6e-73 280.0 225 65.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.1e-73 279.6 229 64.2
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.6e-73 278.9 222 62.2
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.6e-73 278.5 225 64.0
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 4.6e-73 278.5 219 60.3
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 6.1e-73 278.1 225 67.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 6.1e-73 278.1 229 64.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.4e-72 276.9 226 58.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.8e-72 276.6 216 60.6
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.3e-72 276.2 246 63.8
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-72 276.2 220 66.4
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.9e-72 275.4 225 64.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 5.1e-72 275.0 217 65.4
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.7e-72 274.6 215 62.8
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 6.7e-72 274.6 224 67.0
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.5e-71 272.7 225 60.9
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-70 269.6 226 65.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.2e-70 269.6 223 63.2
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.8e-70 269.2 224 63.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-70 268.9 221 61.5
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.8e-70 268.5 221 61.1
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 8.2e-70 267.7 226 65.5
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 8.2e-70 267.7 171 71.9
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.2e-70 267.7 221 63.3
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.1e-69 267.3 221 61.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.1e-69 267.3 224 64.3
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.4e-69 266.9 225 61.8
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.4e-69 266.9 226 62.4
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-69 266.9 229 61.6
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.4e-69 266.9 216 65.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.8e-69 266.5 225 63.6
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.4e-69 266.2 226 64.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.1e-69 265.8 221 63.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.1e-69 265.4 225 57.8
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 6.9e-69 264.6 225 57.8
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 6.9e-69 264.6 248 59.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 9.1e-69 264.2 231 63.2
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.6e-68 262.7 230 60.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.0e-67 260.8 246 60.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.7e-67 260.0 216 63.9
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.7e-67 260.0 225 60.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.8e-67 258.8 224 58.5
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 3.8e-67 258.8 228 61.0
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.9e-66 256.5 223 61.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 2.5e-66 256.1 222 62.6
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-65 253.8 223 57.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.1e-65 253.1 223 57.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.1e-65 253.1 223 57.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.1e-65 253.1 223 57.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 3.6e-65 252.3 227 59.9
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 6.1e-65 251.5 159 72.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 5.1e-64 248.4 207 60.4
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 6.7e-64 248.1 232 54.3
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-63 247.3 221 62.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-63 246.9 223 57.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.7e-62 243.4 226 59.3
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.7e-62 243.4 267 52.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.2e-62 243.0 254 51.6
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.8e-62 241.9 218 54.1
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.8e-62 241.9 227 59.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.3e-62 241.5 162 68.5
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 3.1e-61 239.2 239 53.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 4.1e-61 238.8 223 53.4
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 7.0e-61 238.0 236 55.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 9.1e-61 237.7 274 47.4
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.0e-60 236.5 254 55.1
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.5e-60 235.3 219 54.3
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-59 233.4 197 62.9
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.9e-59 232.6 235 52.8
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.8e-54 216.1 142 66.2
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 4.8e-54 215.3 127 81.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 9.1e-53 211.1 140 69.3
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-52 209.5 270 44.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.5e-50 201.8 130 70.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.0e-48 197.6 238 48.7
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.0e-48 195.7 140 66.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.2e-48 195.3 170 55.9
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.2e-46 189.9 130 68.5
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.1e-45 185.7 135 63.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 5.9e-44 181.8 135 60.0
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-43 178.3 130 61.5
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.9e-42 176.8 151 55.0
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.3e-40 169.9 122 64.8
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.4e-37 158.7 134 54.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-33 147.5 234 44.0
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.4e-31 139.4 90 65.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 3.4e-31 139.4 129 56.6
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.4e-29 134.0 91 64.8
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.0e-23 113.6 71 73.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.3e-22 110.9 228 29.8
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-21 107.5 115 47.8
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.4e-21 107.5 100 67.0
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.2e-20 104.4 123 39.0
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-20 103.6 79 67.1
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.0e-19 99.0 164 36.6
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.8e-16 90.5 102 41.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.3e-16 90.1 77 62.3
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 6.8e-16 88.6 134 32.1
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.4e-15 86.3 117 35.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.2e-14 83.6 93 60.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 3.7e-14 82.8 94 48.9
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 3.7e-14 82.8 85 64.7
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.9e-14 82.4 97 57.7
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 7.8e-12 75.1 73 53.4
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.7e-11 73.9 56 66.1
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 4.0e-08 62.8 54 59.3


User provided reference genes

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