Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 2.2e-179 632.1 310 100.0
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.0e-168 596.7 309 94.5
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 9.8e-151 537.0 322 83.9
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.7e-147 526.2 323 80.5
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.9e-147 525.0 299 87.0
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.8e-144 516.2 313 81.5
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 6.8e-144 514.2 311 81.7
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.2e-141 505.4 309 79.9
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.9e-139 498.4 307 79.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 3.3e-138 495.4 320 77.2
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.2e-137 493.4 320 76.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.6e-137 491.9 321 76.0
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 3.3e-130 468.8 320 71.2
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 7.1e-109 397.9 305 64.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 7.1e-109 397.9 310 63.5
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.1e-106 390.6 317 62.8
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.5e-106 390.2 316 62.3
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 5.7e-106 388.3 314 61.5
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 7.4e-106 387.9 308 62.7
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.3e-105 387.1 308 63.0
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.1e-104 384.0 313 61.3
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.4e-104 383.6 316 61.7
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.5e-103 380.2 317 61.5
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 4.5e-103 378.6 316 61.7
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 7.6e-103 377.9 315 60.6
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.0e-102 377.5 316 60.4
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.3e-102 377.1 313 61.0
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.3e-102 377.1 310 62.6
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.7e-102 376.7 316 60.1
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.9e-102 375.9 303 61.7
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 3.8e-102 375.6 299 61.2
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.1e-101 374.0 320 60.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.1e-101 374.0 312 59.9
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.9e-101 373.2 303 61.4
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 5.5e-101 371.7 305 61.6
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 9.3e-101 370.9 314 59.2
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 2.7e-100 369.4 306 60.1
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.3e-99 366.3 311 60.5
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 5.1e-99 365.2 306 60.1
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.1e-98 364.0 311 58.5
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.5e-98 363.6 316 58.9
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 4.3e-98 362.1 313 59.4
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.3e-97 360.5 337 55.2
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.3e-97 360.5 314 57.0
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 1.7e-97 360.1 309 59.9
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 2.2e-97 359.8 314 59.6
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.1e-96 357.5 309 63.8
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 4.1e-96 355.5 303 59.1
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 9.1e-96 354.4 365 54.2
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.2e-95 354.0 316 54.4
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 3.4e-95 352.4 319 57.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 3.4e-95 352.4 319 57.1
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.5e-95 352.1 297 58.2
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 5.0e-94 348.6 307 59.0
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 8.5e-94 347.8 326 57.4
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 1.4e-93 347.1 360 52.2
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.5e-93 346.3 266 64.3
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 2.5e-93 346.3 299 59.9
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 3.2e-93 345.9 303 58.4
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 5.5e-93 345.1 311 54.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 7.2e-93 344.7 287 61.3
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 9.4e-93 344.4 300 57.0
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 2.3e-91 339.7 267 62.9
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.0e-91 339.3 365 50.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 3.9e-91 339.0 372 50.0
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.0e-90 336.7 266 62.8
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 3.3e-90 335.9 315 56.2
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 4.4e-90 335.5 367 50.1
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.2e-89 333.2 271 62.0
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.8e-89 332.0 274 59.5
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 6.3e-89 331.6 370 49.5
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 6.3e-89 331.6 370 49.5
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.1e-88 329.3 344 52.0
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 5.3e-88 328.6 312 55.4
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 5.3e-88 328.6 278 59.4
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.0e-86 324.3 316 54.7
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.1e-85 320.9 300 56.0
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 2.5e-85 319.7 316 52.5
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.0e-83 312.8 284 57.0
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 3.9e-83 312.4 273 55.3
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.0e-82 310.1 301 54.2
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 2.0e-82 310.1 331 51.7
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 8.2e-81 304.7 316 53.5
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.1e-80 304.3 309 53.1
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.1e-80 304.3 309 53.1
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.1e-80 302.4 263 57.0
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 3.5e-79 299.3 328 47.6
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 8.0e-76 288.1 231 61.9
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 8.8e-75 284.6 311 47.6
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 3.3e-74 282.7 294 49.3
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.5e-74 281.6 298 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.4e-72 276.6 309 50.2
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.7e-71 273.1 309 49.8
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 4.5e-71 272.3 191 68.6
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 5.5e-69 265.4 217 60.8
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 5.5e-69 265.4 230 59.6
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 7.2e-69 265.0 228 61.8
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.1e-68 263.5 195 66.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 5.2e-67 258.8 299 48.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 5.2e-67 258.8 240 57.5
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 8.8e-67 258.1 271 52.4
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-66 257.7 313 44.4
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.4e-66 256.1 311 44.4
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 3.4e-66 256.1 238 55.0
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.7e-65 252.7 231 56.3
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 2.7e-63 246.5 203 59.6
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 5.9e-63 245.4 220 58.2
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 5.9e-55 218.8 151 67.5
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 7.8e-55 218.4 281 43.1
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.3e-54 216.9 314 44.9
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.5e-53 213.4 179 57.5
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.6e-52 209.5 260 45.8
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 3.0e-51 206.5 142 66.9
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 8.3e-49 198.4 180 58.9
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 6.2e-44 182.2 132 67.4
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.4e-40 170.2 181 53.6
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.2e-39 167.9 123 64.2
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 2.3e-38 163.7 220 45.5
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.2e-34 151.4 160 49.4
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.1e-31 140.6 140 54.3
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 4.6e-31 139.4 100 66.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 8.4e-25 118.6 162 42.6
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 2.4e-24 117.1 89 62.9
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.1e-23 114.0 89 65.2
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.0e-22 111.7 75 70.7
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 3.0e-14 83.6 102 47.1
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.4e-11 73.9 80 50.0
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.7e-09 67.8 66 47.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.4e-08 64.7 88 44.3
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 7.1e-08 62.4 88 43.2
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 3.5e-07 60.1 57 52.6
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 1.0e-06 58.5 42 66.7
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.0e-06 58.5 42 66.7
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.0e-06 58.5 42 66.7
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 1.0e-06 58.5 41 63.4


User provided reference genes

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