Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 2.7e-197 691.8 355 100.0
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.7e-186 656.0 355 94.6
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 7.7e-184 647.1 355 93.0
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 2.3e-180 635.6 355 92.1
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 2.8e-178 628.6 355 91.3
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 4.5e-176 621.3 355 89.9
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 4.9e-170 601.3 355 88.5
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 2.0e-168 595.9 355 87.6
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.0e-167 593.6 356 87.1
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 1.7e-167 592.8 356 86.8
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-167 592.8 355 86.8
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-167 592.8 355 87.0
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 3.9e-167 591.7 355 86.8
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 5.0e-167 591.3 356 86.2
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 8.6e-167 590.5 356 86.5
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 1.9e-166 589.3 356 86.2
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 6.8e-164 580.9 355 85.1
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.8e-132 476.5 355 71.0
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.3e-126 455.3 355 69.0
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 8.7e-119 431.0 352 67.0
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 1.4e-113 413.7 390 60.8
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 5.9e-107 391.7 353 61.2
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 7.7e-107 391.3 353 60.6
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.0e-106 391.0 355 60.3
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.7e-106 390.2 384 58.9
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.2e-106 389.8 353 60.6
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.8e-106 389.0 379 58.0
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.0e-106 388.7 353 60.1
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.5e-105 386.3 372 59.7
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.5e-105 385.2 366 58.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.2e-104 384.0 381 58.0
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.7e-104 382.9 353 60.6
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 4.6e-104 382.1 369 57.2
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 4.6e-104 382.1 372 57.8
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 7.9e-104 381.3 361 60.1
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.8e-103 380.2 376 58.2
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 2.3e-103 379.8 374 58.8
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 3.0e-103 379.4 375 58.7
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 5.1e-103 378.6 384 57.6
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 6.7e-103 378.3 381 58.0
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 6.7e-103 378.3 361 59.3
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 8.8e-103 377.9 389 55.5
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.5e-102 377.1 375 57.9
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.5e-102 376.3 375 58.9
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 2.5e-102 376.3 372 57.8
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 7.4e-102 374.8 386 57.5
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 9.7e-102 374.4 396 55.6
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 1.7e-101 373.6 359 58.2
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.2e-101 373.2 394 56.1
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 2.8e-101 372.9 378 55.8
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 2.8e-101 372.9 375 58.4
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 4.8e-101 372.1 356 59.3
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.4e-100 370.5 373 60.1
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.4e-100 370.5 355 59.2
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.4e-100 370.5 354 60.5
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.8e-100 370.2 373 60.1
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 2.4e-100 369.8 383 58.0
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 3.1e-100 369.4 362 59.1
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 4.1e-100 369.0 370 57.0
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 5.3e-100 368.6 382 56.5
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 5.3e-100 368.6 387 56.1
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.0e-99 366.7 389 56.0
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 2.0e-99 366.7 379 56.2
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.6e-99 366.3 383 55.1
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 3.4e-99 365.9 382 55.8
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 5.9e-99 365.2 375 56.0
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 7.7e-99 364.8 380 55.3
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.9e-98 362.8 380 54.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 3.8e-98 362.5 390 53.8
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 5.0e-98 362.1 386 55.2
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 8.5e-98 361.3 382 55.8
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 1.4e-97 360.5 382 55.2
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.9e-97 360.1 356 58.1
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 2.5e-97 359.8 387 55.3
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 2.5e-97 359.8 385 57.4
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.2e-97 359.0 386 54.9
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.5e-97 358.6 379 58.6
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 7.2e-97 358.2 356 57.9
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.2e-97 358.2 378 58.5
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.6e-96 357.1 391 53.5
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.1e-96 356.7 377 54.6
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 2.7e-96 356.3 386 54.4
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.6e-96 355.9 314 61.5
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 4.7e-96 355.5 358 57.3
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.1e-94 350.9 380 56.6
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.1e-94 350.9 375 57.9
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.1e-94 350.9 386 54.1
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 2.0e-94 350.1 382 53.7
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.3e-94 349.4 375 57.6
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 2.2e-93 346.7 372 55.1
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 2.2e-93 346.7 305 60.7
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 4.8e-93 345.5 352 56.5
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.8e-92 343.6 354 57.3
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 1.8e-92 343.6 357 57.4
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.4e-92 343.2 347 55.6
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 5.3e-92 342.0 363 54.0
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.7e-90 337.0 390 51.5
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 8.5e-90 334.7 374 52.9
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 5.5e-89 332.0 387 51.9
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.4e-87 327.4 315 58.7
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 2.3e-87 326.6 297 58.2
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 9.7e-86 321.2 393 51.1
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.3e-85 320.9 330 53.9
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 3.7e-85 319.3 393 51.4
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 4.8e-85 318.9 300 57.3
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 5.9e-83 312.0 362 52.5
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.9e-82 309.7 383 48.3
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 3.2e-81 306.2 279 59.5
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.2e-80 304.3 356 48.0
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 2.7e-80 303.1 395 46.6
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 4.0e-79 299.3 351 53.0
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.4e-76 290.0 321 50.8
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 9.1e-76 288.1 266 60.5
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.8e-71 273.9 281 55.9
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 3.8e-66 256.1 332 49.7
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 3.8e-66 256.1 332 49.7
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.2e-64 251.1 263 52.5
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.0e-63 246.1 169 69.8
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 6.8e-63 245.4 357 40.3
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.1e-60 236.1 270 54.1
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 9.2e-60 235.0 270 53.7
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 2.8e-48 196.8 200 55.0
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.1e-43 180.6 308 39.6
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.3e-42 177.2 188 56.4
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 4.4e-38 162.9 203 49.3
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 7.6e-30 135.6 286 33.9
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.9e-29 132.9 163 49.1
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 2.4e-28 130.6 84 69.0
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 2.1e-27 127.5 360 33.1
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 3.4e-22 110.2 143 52.4
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.4e-22 109.8 128 46.9
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 6.4e-21 105.9 83 66.3
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.7e-19 100.5 139 51.1
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 2.8e-16 90.5 51 86.3
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 2.8e-16 90.5 91 52.7
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.8e-16 89.7 119 43.7
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 2.1e-11 74.3 158 32.3
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 3.3e-09 67.0 281 28.8
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 9.6e-09 65.5 38 73.7
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.1e-07 62.0 53 58.5
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 1.8e-07 61.2 275 23.6
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.2e-06 58.5 80 48.8
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.0e-06 57.8 166 28.3


User provided reference genes

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