Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G33770 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 9.3e-96 353.6 187 100.0
AL1G18010 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 2.3e-78 295.8 192 85.9
AL3G26140 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 5.3e-67 258.1 142 97.2
Carub.0006s3105 Capsella rubella HOM05D001031 ORTHO05D000857 1.4e-62 243.4 174 78.7
Thhalv10029314m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 2.2e-60 236.1 175 76.6
CARHR254340 Cardamine hirsuta HOM05D001031 ORTHO05D000857 1.6e-55 219.9 173 71.7
AL6G46720 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 5.7e-53 211.5 173 72.3
AT4G11950 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 7.0e-51 204.5 172 68.0
A03p53860 Brassica napus HOM05D001031 ORTHO05D000857 2.4e-43 179.5 185 61.1
BraA03t14455Z Brassica rapa HOM05D001031 ORTHO05D000857 4.1e-43 178.7 185 61.1
C07p52260 Brassica napus HOM05D001031 ORTHO05D000857 5.4e-43 178.3 187 62.0
BolC7t45720H Brassica oleracea HOM05D001031 ORTHO05D000857 5.4e-43 178.3 187 62.0
Sp6g05560 Schrenkiella parvula HOM05D001031 ORTHO05D000857 7.7e-42 174.5 172 61.6
Carub.0007s1838 Capsella rubella HOM05D001031 ORTHO05D000857 5.0e-41 171.8 180 60.6
BcaNung01662 Brassica carinata HOM05D001031 ORTHO05D000857 6.6e-41 171.4 185 59.5
BcaNung01663 Brassica carinata HOM05D001031 ORTHO05D000857 6.6e-41 171.4 185 59.5
BcaC04g21179 Brassica carinata HOM05D001031 ORTHO05D000857 1.9e-40 169.9 157 64.3
AT4G22900 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 5.6e-40 168.3 187 56.7
AL7G30620 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 2.3e-38 162.9 186 55.4
THA.LOC104806357 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 6.8e-38 161.4 172 60.5
THA.LOC104814149 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 2.6e-37 159.5 163 63.2
CARHR229940 Cardamine hirsuta HOM05D001031 ORTHO05D000857 1.3e-36 157.1 182 56.6
Thhalv10027461m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 8.3e-36 154.5 180 56.7
BraA09t38286Z Brassica rapa HOM05D001031 ORTHO05D000857 1.0e-33 147.5 156 57.7
Aa31LG9G10520 Aethionema arabicum HOM05D001031 ORTHO05D000857 3.9e-33 145.6 167 59.3
A09p27180 Brassica napus HOM05D001031 ORTHO05D000857 5.0e-33 145.2 156 57.1
BcaC04g21181 Brassica carinata HOM05D001031 ORTHO05D000857 1.5e-32 143.7 156 56.4
C09p34500 Brassica napus HOM05D001031 ORTHO05D000857 1.5e-32 143.7 156 56.4
BolC9t56294H Brassica oleracea HOM05D001031 ORTHO05D000857 1.5e-32 143.7 156 56.4
Aa31LG6G4970 Aethionema arabicum HOM05D001031 ORTHO05D000857 1.6e-31 140.2 166 54.8
BcaB01g01694 Brassica carinata HOM05D001031 ORTHO05D000857 7.5e-29 131.3 157 56.1
Duzib205G1613 Durio zibethinus HOM05D001031 ORTHO05D000857 8.6e-25 117.9 133 53.4
TWI60G0074 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 1.2e-23 114.0 165 47.9
AL8G17770 Arabidopsis lyrata HOM05D013377 ORTHO05D015364 1.6e-23 113.6 66 90.9
Eucgr.D01942 Eucalyptus grandis HOM05D001031 ORTHO05D000857 4.7e-23 112.1 133 54.1
Thecc.03G268100 Theobroma cacao HOM05D001031 ORTHO05D000857 4.7e-23 112.1 147 49.0
Sp7g20970 Schrenkiella parvula HOM05D001031 ORTHO05D000857 3.1e-22 109.4 124 58.9
Gohir.A09G193700 Gossypium hirsutum HOM05D001031 ORTHO05D000857 5.2e-22 108.6 139 48.9
Manes.01G069900 Manihot esculenta HOM05D001031 ORTHO05D000857 1.5e-21 107.1 147 48.3
CANSAT21G0026 Cannabis sativa HOM05D001031 ORTHO05D000857 2.0e-21 106.7 138 51.4
Potri.001G112800 Populus trichocarpa HOM05D001031 ORTHO05D000857 1.3e-20 104.0 134 51.5
Gohir.D08G195400 Gossypium hirsutum HOM05D001031 ORTHO05D000857 2.2e-20 103.2 132 48.5
Gorai.004G206200 Gossypium raimondii HOM05D001031 ORTHO05D000857 2.2e-20 103.2 132 48.5
Gohir.A08G177100 Gossypium hirsutum HOM05D001031 ORTHO05D000857 2.9e-20 102.8 132 47.7
Nn6g34324 Nelumbo nucifera HOM05D001031 ORTHO05D000857 2.9e-20 102.8 134 47.8
Sabra01G0086200 Salix brachista HOM05D001031 ORTHO05D000857 2.9e-20 102.8 134 50.7
MSTRG.12033 Avicennia marina HOM05D001031 ORTHO05D000857 6.4e-20 101.7 165 41.8
Dinv39037 Davidia involucrata HOM05D001031 ORTHO05D000857 6.4e-20 101.7 162 43.8
FvH4_5g01210 Fragaria vesca HOM05D001031 ORTHO05D000857 6.4e-20 101.7 159 44.7
FAN18G3641 Fragaria x ananassa HOM05D001031 ORTHO05D000857 6.4e-20 101.7 159 44.7
Dinv37707 Davidia involucrata HOM05D000114 ORTHO05D000857 1.1e-19 100.9 161 44.1
Aqoxy7G00503 Aquilegia oxysepala HOM05D001031 ORTHO05D000857 1.9e-19 100.1 160 43.8
FAN08G2622 Fragaria x ananassa HOM05D001031 ORTHO05D000857 1.9e-19 100.1 159 44.0
Cpa.g.sc29.38 Carica papaya HOM05D001031 ORTHO05D000857 3.2e-19 99.4 125 52.0
AUR62010564 Chenopodium quinoa HOM05D001031 ORTHO05D000857 3.2e-19 99.4 134 50.0
AUR62017325 Chenopodium quinoa HOM05D001031 ORTHO05D000857 3.2e-19 99.4 134 50.0
FAN13G2178 Fragaria x ananassa HOM05D001031 ORTHO05D000857 4.1e-19 99.0 159 44.0
FAN04G0527 Fragaria x ananassa HOM05D001031 ORTHO05D000857 7.1e-19 98.2 159 43.4
TAR629G2411 Trochodendron aralioides HOM05D001031 ORTHO05D000857 7.1e-19 98.2 134 46.3
CAN.G981.60 Capsicum annuum HOM05D001031 ORTHO05D000857 1.6e-18 97.1 134 47.8
PGSC0003DMG400022733 Solanum tuberosum HOM05D001031 ORTHO05D000857 1.6e-18 97.1 172 42.4
Cfa012073 Carpinus fangiana HOM05D001031 ORTHO05D000857 2.1e-18 96.7 127 48.8
Prupe.5G087200 Prunus persica HOM05D001031 ORTHO05D000857 2.1e-18 96.7 144 45.1
Sabra03G0083400 Salix brachista HOM05D001031 ORTHO05D000857 2.1e-18 96.7 138 47.1
RcHm_v2.0_Chr7g0199881 Rosa chinensis HOM05D001031 ORTHO05D000857 2.7e-18 96.3 159 42.8
EL10Ac5g12687 Beta vulgaris HOM05D001031 ORTHO05D000857 3.5e-18 95.9 138 45.7
Gohir.D09G187900 Gossypium hirsutum HOM05D001031 ORTHO05D000857 6.0e-18 95.1 139 45.3
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.8e-18 94.7 147 43.5
Gorai.006G210700 Gossypium raimondii HOM05D001031 ORTHO05D000857 7.8e-18 94.7 139 45.3
PSO782G0673 Papaver somniferum HOM05D001031 ORTHO05D000857 7.8e-18 94.7 164 40.9
PSO478G3211 Papaver somniferum HOM05D001031 ORTHO05D000857 1.0e-17 94.4 163 41.1
Potri.003G119400 Populus trichocarpa HOM05D001031 ORTHO05D000857 1.3e-17 94.0 134 47.0
Sed0004189 Sechium edule HOM05D001031 ORTHO05D000857 3.0e-17 92.8 157 42.7
Ah.12g057840 Amaranthus hybridus HOM05D001031 ORTHO05D000857 3.9e-17 92.4 133 46.6
CiPaw.11G143100 Carya illinoinensis HOM05D001031 ORTHO05D000857 5.1e-17 92.0 126 49.2
ECA246G0805 Erigeron canadensis HOM05D001031 ORTHO05D000857 5.1e-17 92.0 160 38.8
MSTRG.1909 Avicennia marina HOM05D001031 ORTHO05D000857 6.6e-17 91.7 141 42.6
Ca_25858_v3 Cicer arietinum L. HOM05D001031 ORTHO05D000857 6.6e-17 91.7 147 44.9
DCAR_000892 Daucus carota HOM05D001031 ORTHO05D000857 6.6e-17 91.7 133 44.4
Actinidia02061 Actinidia chinensis HOM05D001031 ORTHO05D000857 8.6e-17 91.3 131 45.0
HanXRQChr17g0533821 Helianthus annuus HOM05D001031 ORTHO05D000857 1.5e-16 90.5 156 41.0
ECA240G4149 Erigeron canadensis HOM05D001031 ORTHO05D000857 1.9e-16 90.1 145 41.4
Lsat_1_v5_gn_3_4481 Lactuca sativa HOM05D001031 ORTHO05D000857 1.9e-16 90.1 162 37.7
Lalb_Chr18g0048221 Lupinus albus HOM05D001031 ORTHO05D000857 1.9e-16 90.1 136 46.3
Medtr3g010800 Medicago truncatula HOM05D001031 ORTHO05D000857 2.5e-16 89.7 138 44.2
Rhsim07G0096400 Rhododendron simsii HOM05D001031 ORTHO05D000857 2.5e-16 89.7 135 44.4
TPR.G5097 Trifolium pratense HOM05D001031 ORTHO05D000857 2.5e-16 89.7 173 39.3
Ciclev10021289m.g Citrus clementina HOM05D001031 ORTHO05D000857 3.3e-16 89.4 75 66.7
SGA_v2.0_scaffold146G36213 Striga asiatica HOM05D001031 ORTHO05D000857 3.3e-16 89.4 135 45.9
Haze_08986 Corylus avellana HOM05D001031 ORTHO05D000857 4.3e-16 89.0 126 47.6
Cc08_g13750 Coffea canephora HOM05D001031 ORTHO05D000857 5.6e-16 88.6 133 45.9
Duzib084G0533 Durio zibethinus HOM05D001031 ORTHO05D000857 2.1e-15 86.7 147 42.2
Gohir.A12G223700 Gossypium hirsutum HOM05D001031 ORTHO05D000857 4.7e-15 85.5 164 38.4
Gohir.D12G226300 Gossypium hirsutum HOM05D001031 ORTHO05D000857 4.7e-15 85.5 164 38.4
Gorai.008G242300 Gossypium raimondii HOM05D001031 ORTHO05D000857 4.7e-15 85.5 164 38.4
HanXRQChr13g0415771 Helianthus annuus HOM05D001031 ORTHO05D000857 4.7e-15 85.5 142 40.1
Lj8P243T16 Lonicera japonica HOM05D001031 ORTHO05D000857 6.2e-15 85.1 122 48.4
Solyc08g080070.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 1.4e-14 84.0 141 44.7
Sopen08g028420 Solanum pennellii HOM05D001031 ORTHO05D000857 1.4e-14 84.0 141 44.7
Duzib068G0422 Durio zibethinus HOM05D001031 ORTHO05D000857 3.1e-14 82.8 129 43.4
Manes.02G029800 Manihot esculenta HOM05D001031 ORTHO05D000857 3.1e-14 82.8 137 43.8
COL.COLO4_23797 Corchorus olitorius HOM05D001031 ORTHO05D000857 4.0e-14 82.4 133 41.4
Migut.A00896 Erythranthe guttata HOM05D001031 ORTHO05D000857 4.0e-14 82.4 166 38.6
SGA_v2.0_scaffold196G40905 Striga asiatica HOM05D001031 ORTHO05D000857 4.0e-14 82.4 160 41.9
ClCG01G003310 Citrullus lanatus HOM05D001031 ORTHO05D000857 5.2e-14 82.0 72 66.7
MBI11_g11980_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 5.2e-14 82.0 141 46.1
Oeu056819.1 Olea europaea HOM05D001031 ORTHO05D000857 5.2e-14 82.0 133 40.6
Nitab4.5_0001714g0040 Nicotiana tabacum HOM05D001031 ORTHO05D000857 6.8e-14 81.6 134 42.5
Nitab4.5_0010547g0030 Nicotiana tabacum HOM05D000114 ORTHO05D000075 6.8e-14 81.6 134 42.5
MD00G1122700 Malus domestica HOM05D001031 ORTHO05D000857 8.9e-14 81.3 132 43.2
ATR0661G515 Amborella trichopoda HOM05D001031 ORTHO05D000857 1.2e-13 80.9 164 38.4
GSVIVG01019888001 Vitis vinifera HOM05D001031 ORTHO05D000857 1.2e-13 80.9 136 42.6
CSS0037662 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 1.5e-13 80.5 164 38.4
Glyma.04G124500 Glycine max HOM05D001031 ORTHO05D000857 2.6e-13 79.7 136 41.9
MD04G1070700 Malus domestica HOM05D001031 ORTHO05D000857 2.6e-13 79.7 72 65.3
Lsat_1_v5_gn_6_79001 Lactuca sativa HOM05D001031 ORTHO05D000857 3.4e-13 79.3 143 42.7
Lj3g0020372 Lotus japonicus HOM05D001031 ORTHO05D000857 3.7e-12 75.9 135 40.0
BcaNung01018 Brassica carinata HOM05D001031 ORTHO05D000857 4.9e-12 75.5 155 40.0
Migut.E01181 Erythranthe guttata HOM05D001031 ORTHO05D000857 4.9e-12 75.5 162 38.9
Psat0s1896g0080 Pisum sativum HOM05D001031 ORTHO05D000857 8.4e-12 74.7 165 37.6
arahy.Tifrunner.gnm1.ann1.K5BFLR Arachis hypogaea HOM05D001031 ORTHO05D000857 1.4e-11 73.9 143 39.9
Glyma.06G313800 Glycine max HOM05D001031 ORTHO05D000857 1.9e-11 73.6 136 40.4
VMungo1080G1895 Vigna mungo HOM05D001031 ORTHO05D000857 1.9e-11 73.6 149 37.6
MELO3C005614.2 Cucumis melo HOM05D001031 ORTHO05D000857 4.1e-11 72.4 160 35.6
HanXRQChr03g0084101 Helianthus annuus HOM05D001031 ORTHO05D000857 4.1e-11 72.4 140 37.1
Phvul.005G012300 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 4.1e-11 72.4 135 40.0
arahy.Tifrunner.gnm1.ann1.4YMZ2P Arachis hypogaea HOM05D001031 ORTHO05D000857 5.4e-11 72.0 157 38.2
Glyma.06G313900 Glycine max HOM05D001031 ORTHO05D000857 1.2e-10 70.9 150 36.0
Oeu021146.1 Olea europaea HOM05D001031 ORTHO05D000857 2.1e-10 70.1 118 39.8
Migut.E01182 Erythranthe guttata HOM05D001031 ORTHO05D000857 4.6e-10 68.9 123 42.3
Sc01g0008900 Simmondsia chinensis HOM05D001031 ORTHO05D000857 5.1e-09 65.5 103 46.6
PGR031G0037 Punica granatum HOM05D001031 ORTHO05D000857 2.5e-08 63.2 160 36.2
HPP92_027307 Vanilla planifolia HOM05D001031 ORTHO05D000857 5.6e-08 62.0 133 39.1
A01p14120 Brassica napus HOM05D001031 ORTHO05D027116 9.6e-08 61.2 85 47.1
A09p13320 Brassica napus HOM05D001031 ORTHO05D000857 3.6e-07 59.3 145 37.9
BraA09t36981Z Brassica rapa HOM05D001031 ORTHO05D000857 3.6e-07 59.3 145 37.9
BolC4t24453H Brassica oleracea HOM05D001031 ORTHO05D000857 4.7e-07 58.9 145 37.2
ECA248G0606 Erigeron canadensis HOM05D001031 ORTHO05D000857 8.1e-07 58.2 136 32.4
CiPaw.12G100700 Carya illinoinensis HOM05D001031 ORTHO05D000857 1.8e-06 57.0 72 51.4
Peaxi162Scf00732g10014 Petunia axillaris HOM05D001031 ORTHO05D000857 2.4e-06 56.6 145 33.1
Nn4g23021 Nelumbo nucifera HOM05D001031 ORTHO05D000857 4.0e-06 55.8 165 30.9
Haze_24489 Corylus avellana HOM05D001031 ORTHO05D000857 6.8e-06 55.1 156 30.8
SalBow6G5805 Salvia bowleyana HOM05D001031 ORTHO05D000857 6.8e-06 55.1 42 73.8
TAR633G2690 Trochodendron aralioides HOM05D001031 ORTHO05D000857 6.8e-06 55.1 160 31.9
SalBow1G8355 Salvia bowleyana HOM05D001031 ORTHO05D000857 8.9e-06 54.7 47 66.0


User provided reference genes

Program Settings