Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 8.1e-210 733.4 349 100.0
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 8.4e-199 696.8 348 94.5
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 6.2e-194 680.6 350 93.1
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 6.6e-188 660.6 327 94.8
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 9.6e-187 656.8 328 94.5
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 1.8e-180 636.0 324 92.9
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 3.0e-180 635.2 321 92.8
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 1.1e-179 633.3 321 92.8
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 9.6e-179 630.2 324 92.3
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 8.7e-164 580.5 321 85.0
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 9.0e-161 570.5 309 86.1
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 6.9e-153 544.3 309 80.6
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.2e-152 543.5 309 81.6
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 2.2e-151 539.3 309 81.6
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.8e-151 538.5 309 80.9
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.2e-149 533.5 309 79.0
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.1e-149 532.7 309 80.3
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 2.1e-149 532.7 315 79.0
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.7e-149 532.3 309 79.3
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 4.7e-149 531.6 304 81.2
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.0e-148 530.4 311 78.5
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 3.9e-148 528.5 309 79.3
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 6.7e-148 527.7 309 78.0
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.5e-147 526.6 318 75.8
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 2.6e-147 525.8 309 78.6
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 2.6e-147 525.8 315 77.1
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 3.3e-147 525.4 309 79.9
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.3e-147 525.4 309 79.6
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 4.4e-147 525.0 309 79.6
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.4e-147 525.0 309 78.3
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 9.7e-147 523.9 315 77.8
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.3e-146 523.5 308 78.2
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 2.8e-146 522.3 319 74.6
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.8e-146 522.3 312 77.2
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.8e-146 522.3 308 79.5
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 3.7e-146 521.9 307 78.2
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 4.8e-146 521.5 309 78.0
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 4.8e-146 521.5 313 77.0
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 6.3e-146 521.2 309 76.7
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 8.2e-146 520.8 309 78.0
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 8.2e-146 520.8 309 78.3
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.4e-145 520.0 309 78.0
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.4e-145 520.0 309 79.0
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.1e-145 518.8 309 76.1
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 7.0e-145 517.7 304 80.3
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 9.1e-145 517.3 309 77.0
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.2e-144 516.9 307 76.9
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.6e-144 516.5 309 77.7
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.6e-144 516.5 310 76.8
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.6e-144 515.8 304 78.9
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.6e-144 515.8 304 79.3
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.6e-144 515.8 309 75.7
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.5e-144 515.4 309 76.4
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 3.5e-144 515.4 309 74.8
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 4.5e-144 515.0 304 78.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 4.5e-144 515.0 311 75.9
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 7.7e-144 514.2 308 76.9
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.0e-143 513.8 310 78.4
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.0e-143 513.8 310 78.4
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 2.2e-143 512.7 310 76.1
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 2.9e-143 512.3 317 76.0
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.5e-142 510.0 309 76.4
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.5e-142 510.0 309 76.1
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.5e-142 510.0 309 76.4
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 1.9e-142 509.6 309 76.1
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.9e-142 509.6 304 76.6
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.2e-142 508.8 309 75.7
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 3.2e-142 508.8 310 75.5
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 5.5e-142 508.1 302 76.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 9.4e-142 507.3 310 76.1
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 9.4e-142 507.3 309 76.7
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.2e-141 506.9 307 75.6
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 2.7e-141 505.8 309 74.1
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 3.6e-141 505.4 306 75.8
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.7e-141 505.0 315 73.3
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.7e-141 505.0 307 76.2
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 6.1e-141 504.6 309 75.1
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 1.8e-140 503.1 307 76.5
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.8e-140 503.1 311 75.9
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 1.8e-140 503.1 310 76.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 1.8e-140 503.1 310 75.8
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 6.7e-140 501.1 314 72.6
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 2.0e-139 499.6 310 75.2
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.6e-139 499.2 309 74.4
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 2.6e-139 499.2 309 73.1
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 4.4e-139 498.4 310 74.5
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 9.7e-139 497.3 303 76.2
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.3e-138 496.9 309 74.4
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.3e-138 496.9 309 74.1
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.2e-138 496.1 309 74.1
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-137 493.4 304 74.3
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.4e-137 493.4 309 73.5
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.4e-137 493.4 345 67.5
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 3.1e-137 492.3 310 74.2
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 4.1e-137 491.9 309 75.4
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 2.0e-136 489.6 305 76.7
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.0e-135 487.3 311 74.0
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.5e-134 482.6 310 73.2
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.2e-133 480.3 320 71.9
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 8.8e-132 474.2 304 75.3
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.0e-131 473.0 312 69.2
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 5.7e-123 444.9 305 67.2
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.8e-122 442.6 308 69.2
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.3e-122 441.4 309 69.9
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.0e-120 436.4 310 70.0
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 5.9e-120 434.9 310 68.4
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 6.6e-119 431.4 316 63.6
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 4.7e-117 425.2 291 66.7
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 8.0e-117 424.5 285 68.4
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.8e-116 423.3 304 69.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.5e-115 420.2 329 64.1
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.5e-115 420.2 329 64.1
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.3e-114 417.2 304 67.8
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 6.4e-114 414.8 207 92.8
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.2e-113 412.5 309 59.2
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 4.1e-113 412.1 305 62.3
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.2e-112 410.6 319 58.3
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 1.0e-111 407.5 231 79.7
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.4e-107 392.1 438 49.3
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.2e-106 389.8 331 55.3
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 1.4e-97 360.5 209 80.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.0e-95 354.4 251 68.5
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 2.8e-93 346.3 206 77.7
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.5e-91 340.5 215 74.9
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.1e-80 303.5 176 78.4
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 6.0e-80 302.0 165 82.4
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 1.6e-77 293.9 182 73.6
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 7.6e-75 285.0 309 45.6
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.2e-67 261.2 304 50.3
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 1.8e-47 194.1 208 46.2
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.7e-40 170.2 97 76.3
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 2.6e-35 153.7 87 78.2
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.6e-35 153.7 99 72.7
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.5e-34 149.1 94 70.2
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.1e-28 131.7 80 78.8
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.1e-28 129.8 83 68.7
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-25 121.7 69 76.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 9.4e-25 118.6 311 29.3
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.2e-22 111.7 91 59.3
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 4.8e-21 106.3 314 29.6
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 5.5e-17 92.8 62 74.2
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.6e-11 74.7 181 29.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 3.3e-09 67.0 40 70.0
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.6e-08 63.5 56 62.5
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.0e-08 62.4 48 58.3
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.0e-07 62.0 136 30.9


User provided reference genes

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