Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 5.0e-103 377.9 203 100.0
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.6e-85 318.5 197 84.3
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 2.6e-75 285.8 208 77.4
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 8.1e-69 264.2 203 71.4
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 2.6e-67 259.2 205 71.7
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.3e-66 256.9 193 71.0
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 9.2e-65 250.8 204 70.1
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 9.2e-65 250.8 204 70.1
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 3.5e-56 222.2 133 81.2
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 1.9e-54 216.5 152 70.4
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 7.3e-54 214.5 152 69.7
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 7.3e-54 214.5 152 69.7
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 3.8e-50 202.2 152 67.1
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 5.4e-49 198.4 152 65.8
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.8e-45 186.0 126 70.6
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.1e-44 182.6 116 75.0
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 3.5e-40 169.1 116 69.8
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 4.6e-40 168.7 136 65.4
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 5.3e-36 155.2 197 50.3
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 5.0e-26 122.1 109 66.1
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 5.5e-25 118.6 116 56.9
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 1.6e-24 117.1 116 57.8
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 2.7e-24 116.3 116 57.8
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.5e-24 115.9 109 60.6
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 6.1e-24 115.2 116 56.0
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 1.0e-23 114.4 116 56.0
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.0e-23 114.4 116 56.0
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.3e-23 114.0 116 56.0
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 8.7e-23 111.3 116 51.7
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 3.3e-22 109.4 112 52.7
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 5.7e-22 108.6 127 52.0
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 5.3e-20 102.1 116 50.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 6.9e-20 101.7 134 47.8
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 7.7e-19 98.2 119 51.3
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.2e-18 96.7 120 47.5
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 2.9e-18 96.3 96 54.2
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 6.5e-18 95.1 124 48.4
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.1e-17 94.4 122 47.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 2.5e-17 93.2 121 47.1
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 7.2e-17 91.7 67 71.6
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 9.4e-17 91.3 104 52.9
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 9.4e-17 91.3 131 45.0
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.1e-16 90.1 126 46.0
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.7e-16 89.7 92 55.4
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 2.7e-16 89.7 133 43.6
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 3.6e-16 89.4 118 44.9
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 6.1e-16 88.6 91 54.9
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.8e-15 87.0 70 58.6
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.3e-15 86.7 92 53.3
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 3.0e-15 86.3 135 41.5
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 6.7e-15 85.1 118 42.4
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 8.8e-15 84.7 93 52.7
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.1e-14 84.3 85 49.4
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.1e-14 84.3 65 66.2
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.5e-14 83.2 93 54.8
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 3.3e-14 82.8 92 50.0
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.7e-14 82.0 106 41.5
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 5.7e-14 82.0 127 46.5
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 7.4e-14 81.6 66 59.1
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 7.4e-14 81.6 105 44.8
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 9.7e-14 81.3 86 55.8
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 9.7e-14 81.3 108 43.5
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.3e-13 80.9 92 44.6
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.7e-13 80.5 65 64.6
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.7e-13 80.5 92 48.9
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.7e-13 80.5 91 51.6
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 2.8e-13 79.7 101 49.5
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 2.8e-13 79.7 95 51.6
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 6.3e-13 78.6 98 45.9
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 6.3e-13 78.6 101 48.5
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 1.1e-12 77.8 72 59.7
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.1e-12 77.8 87 51.7
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 3.1e-12 76.3 95 49.5
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 4.1e-12 75.9 78 57.7
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 4.1e-12 75.9 90 46.7
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 5.3e-12 75.5 96 42.7
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 6.9e-12 75.1 96 47.9
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 9.1e-12 74.7 78 55.1
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 9.1e-12 74.7 64 60.9
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 4.5e-11 72.4 130 37.7
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 5.9e-11 72.0 117 40.2
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 7.7e-11 71.6 125 42.4
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 1.3e-10 70.9 112 43.8
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 8.5e-10 68.2 70 61.4
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 1.9e-09 67.0 67 44.8
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.9e-09 67.0 102 38.2
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 1.9e-09 67.0 90 45.6
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.9e-09 67.0 102 39.2
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.9e-09 67.0 106 43.4
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 2.5e-09 66.6 115 38.3
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 4.2e-09 65.9 102 37.3
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 7.2e-09 65.1 109 36.7
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 9.4e-09 64.7 85 43.5
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 9.4e-09 64.7 106 41.5
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 9.4e-09 64.7 102 41.2
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 9.4e-09 64.7 70 52.9
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 1.2e-08 64.3 68 39.7
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.2e-08 64.3 130 41.5
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 2.1e-08 63.5 97 48.5
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 6.1e-08 62.0 82 48.8
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.4e-07 60.8 144 37.5
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 1.1e-06 57.8 75 48.0


User provided reference genes

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