Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.2e-264 916.0 468 100.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 2.3e-252 875.2 468 96.2
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 9.4e-246 853.2 469 93.2
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.3e-244 848.6 468 92.1
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 8.0e-237 823.5 465 89.9
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.4e-233 812.0 471 88.1
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.1e-233 811.6 461 88.9
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-232 809.7 462 89.0
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 2.0e-232 808.9 462 88.7
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 3.8e-231 804.7 468 87.2
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 6.5e-231 803.9 462 88.3
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.5e-230 802.0 462 87.9
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.2e-229 799.7 460 88.3
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 6.1e-229 797.3 462 87.9
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-227 792.0 460 87.6
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 3.3e-198 695.3 464 75.6
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.8e-189 665.6 446 78.0
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-187 659.8 464 74.6
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 3.9e-167 592.0 464 63.8
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 4.0e-164 582.0 464 62.9
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 6.9e-164 581.3 465 63.2
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.5e-160 568.9 464 61.2
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 7.9e-160 567.8 465 61.3
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.9e-158 563.1 462 60.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.8e-157 559.3 466 58.8
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 3.7e-157 558.9 463 60.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 6.2e-157 558.1 705 49.1
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.8e-156 556.6 465 59.6
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 3.1e-156 555.8 464 58.8
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 4.0e-156 555.4 464 60.8
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.2e-155 553.9 465 59.8
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.5e-155 553.5 457 60.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 5.8e-155 551.6 705 48.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.1e-153 547.4 449 60.8
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.1e-153 547.4 464 59.9
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.9e-153 546.6 461 58.4
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.2e-152 543.9 463 59.2
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.1e-152 543.1 461 58.8
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.0e-152 541.6 465 59.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 6.0e-152 541.6 465 59.6
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.8e-151 540.0 465 59.4
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 5.1e-151 538.5 514 53.7
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 6.7e-151 538.1 461 57.0
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.5e-150 537.0 465 57.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.9e-150 536.6 461 57.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 4.3e-150 535.4 448 59.4
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.7e-150 535.0 468 57.5
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 7.4e-150 534.6 467 57.0
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 7.4e-150 534.6 465 57.2
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 9.6e-150 534.3 464 58.4
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.3e-149 533.9 456 57.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.6e-149 533.5 456 57.2
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.3e-148 528.5 461 57.5
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 2.9e-146 522.7 461 56.4
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.8e-146 522.3 463 56.4
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 8.4e-146 521.2 465 56.1
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.4e-145 520.4 465 56.1
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.2e-144 517.3 457 55.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.7e-144 516.2 452 55.8
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.7e-144 516.2 497 52.7
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 3.5e-144 515.8 464 55.6
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 6.1e-144 515.0 461 54.0
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.1e-142 510.8 464 55.8
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.9e-142 510.0 464 55.2
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.6e-141 506.9 462 54.3
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.7e-141 505.8 464 55.6
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.4e-140 503.1 457 55.4
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 4.1e-140 502.3 467 54.2
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.9e-140 501.5 432 57.2
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 9.0e-140 501.1 465 53.8
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.5e-139 500.4 464 52.8
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 4.5e-139 498.8 464 52.2
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 5.9e-139 498.4 466 54.5
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.0e-138 497.7 460 54.8
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 3.8e-138 495.7 458 53.9
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.4e-137 493.8 461 54.9
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.9e-137 493.4 460 52.4
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 3.2e-137 492.7 462 52.4
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 5.5e-137 491.9 466 54.5
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.2e-136 490.7 467 53.3
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 7.9e-136 488.0 459 52.3
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.4e-135 487.3 459 54.2
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.4e-135 487.3 458 53.5
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 6.7e-135 485.0 448 52.5
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.1e-134 484.2 458 52.2
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.3e-133 478.4 464 53.4
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 6.3e-133 478.4 464 53.4
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.8e-132 476.9 455 50.3
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.4e-132 476.5 463 50.3
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 4.2e-129 465.7 437 52.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.8e-127 460.3 456 50.4
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.7e-125 453.8 449 49.2
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 4.8e-125 452.2 458 49.8
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.4e-124 450.7 462 50.2
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.3e-124 448.7 461 50.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 9.1e-124 448.0 421 54.6
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.7e-122 443.7 461 49.2
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 6.1e-120 435.3 464 49.1
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 5.2e-119 432.2 495 46.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.1e-116 424.5 422 48.6
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.4e-116 423.3 458 49.8
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 7.2e-113 411.8 458 46.9
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.0e-111 407.9 463 46.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 8.8e-111 404.8 411 52.3
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.4e-108 396.7 476 43.1
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.7e-106 390.6 459 44.4
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.4e-92 344.4 291 55.7
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.3e-85 321.2 421 39.9
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.1e-81 308.1 463 36.9
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 3.6e-80 303.1 279 53.4
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 8.3e-77 292.0 472 37.7
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 5.4e-76 289.3 493 35.7
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.9e-73 280.8 528 35.0
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.3e-61 241.5 522 31.8
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.5e-57 228.0 510 29.4
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.9e-57 227.6 328 41.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.9e-50 203.4 127 78.7
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.9e-50 203.4 127 78.7
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.3e-48 198.4 124 78.2
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.5e-46 191.4 105 87.6
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.2e-45 187.6 377 37.4
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 4.6e-43 179.9 357 29.4
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 8.1e-40 169.1 193 45.6
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 1.2e-38 165.2 180 42.2
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 4.5e-38 163.3 180 41.7
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 2.7e-35 154.1 132 55.3
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.3e-34 151.8 359 29.8
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.1e-31 142.1 445 27.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.2e-30 138.7 115 56.5
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 5.0e-29 133.3 349 24.6
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 9.3e-28 129.0 217 38.2
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 6.1e-27 126.3 295 26.8
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.8e-16 90.1 168 31.5
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.3e-15 86.7 120 34.2
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.0e-13 80.1 72 58.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 3.2e-12 77.4 106 34.9
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 4.2e-12 77.0 106 34.0
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.0e-10 72.4 73 45.2
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.0e-06 58.2 38 65.8
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 2.6e-06 57.8 40 65.0
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 5.9e-06 56.6 39 61.5


User provided reference genes

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