Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 0.0e+00 1610.5 824 100.0
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 0.0e+00 1310.4 830 84.2
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 0.0e+00 1223.8 827 81.0
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 0.0e+00 1195.3 839 77.8
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 0.0e+00 1166.8 831 76.1
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 0.0e+00 1103.2 846 73.3
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 3.4e-259 898.7 783 67.4
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 3.1e-252 875.5 828 63.0
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-250 869.8 836 63.9
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 5.5e-249 864.8 830 63.9
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 3.6e-248 862.1 831 63.8
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 7.9e-248 860.9 836 64.1
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 2.4e-244 849.4 828 63.2
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 2.0e-243 846.3 836 63.5
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.2e-217 758.8 828 57.4
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-214 750.4 834 57.0
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-213 746.5 832 55.9
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.3e-210 736.5 834 56.2
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.9e-180 637.1 754 53.7
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 4.0e-175 619.4 753 52.9
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 9.6e-153 545.0 982 42.7
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.8e-151 540.8 758 49.1
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.1e-148 531.6 955 43.6
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 2.3e-130 470.7 1001 41.9
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.3e-128 464.9 990 43.4
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.4e-122 444.9 967 42.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 9.7e-121 438.7 986 42.2
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.1e-116 425.2 999 40.8
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 2.9e-109 400.6 903 41.1
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 2.9e-109 400.6 975 39.6
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 5.5e-108 396.4 893 41.0
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.6e-107 394.8 904 40.7
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 8.8e-106 389.0 980 39.4
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-104 385.2 978 39.1
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 5.3e-103 379.8 1000 37.1
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-101 374.4 986 37.3
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.2e-101 374.4 986 37.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 8.5e-101 372.5 904 40.9
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-99 367.9 1019 36.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 2.7e-99 367.5 1049 36.6
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-98 364.8 873 39.2
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.5e-97 361.7 985 37.4
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-97 360.5 985 37.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 7.5e-97 359.4 831 41.4
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-94 351.7 1010 35.6
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.0e-93 349.0 1011 35.5
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 8.9e-90 335.9 934 37.3
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.1e-74 284.3 195 76.9
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 8.3e-64 249.6 876 31.4
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 3.0e-61 241.1 1123 27.2
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 5.1e-61 240.4 194 71.1
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 8.9e-58 229.6 1132 27.4
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 8.4e-56 223.0 1001 29.1
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 2.4e-55 221.5 1051 27.5
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 5.4e-55 220.3 1110 27.5
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.1e-54 218.4 933 28.5
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.0e-54 216.9 1110 27.1
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 7.8e-54 216.5 1189 27.2
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 5.1e-53 213.8 1169 27.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.5e-52 212.2 1153 27.1
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.5e-52 211.5 1048 28.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 3.3e-52 211.1 877 29.9
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.3e-52 210.7 1112 27.2
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.0e-50 204.1 1087 27.0
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 6.9e-50 203.4 533 35.8
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.4e-49 201.1 1113 27.3
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 4.4e-49 200.7 1013 27.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.8e-49 200.3 1017 27.2
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.8e-49 200.3 927 28.6
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 9.9e-49 199.5 534 33.7
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 2.2e-48 198.4 1022 27.5
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.8e-48 197.6 1080 26.9
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 6.4e-48 196.8 760 29.9
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 4.2e-47 194.1 938 27.4
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.2e-47 194.1 938 27.4
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 9.3e-47 193.0 543 35.0
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.2e-46 192.6 1019 26.1
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.7e-46 191.4 1029 26.9
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.7e-46 191.4 1029 26.9
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.5e-46 191.0 924 26.7
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.5e-46 191.0 1006 27.5
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 7.9e-46 189.9 515 35.1
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 7.9e-46 189.9 569 34.4
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.0e-45 189.5 567 34.0
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.3e-45 189.1 606 32.2
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.0e-45 188.0 567 33.2
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 5.1e-45 187.2 603 32.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 8.7e-45 186.4 542 33.8
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 4.3e-44 184.1 905 29.0
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 5.6e-44 183.7 1133 25.9
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 2.1e-43 181.8 966 27.4
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 8.1e-43 179.9 993 27.5
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.5e-41 175.6 941 27.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.0e-41 175.3 378 38.4
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 5.8e-41 173.7 357 37.8
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 5.8e-41 173.7 794 29.5
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 7.6e-41 173.3 881 28.3
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.9e-40 171.4 527 32.3
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 4.9e-40 170.6 941 27.8
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.4e-39 168.3 543 31.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 3.2e-39 167.9 864 28.0
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 3.5e-38 164.5 706 28.8
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.6e-38 164.1 389 36.2
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 4.6e-38 164.1 425 33.9
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 6.0e-38 163.7 1125 25.6
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.8e-37 162.2 520 30.6
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 2.3e-37 161.8 919 27.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 5.1e-37 160.6 946 26.3
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 5.1e-37 160.6 1065 26.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.1e-36 159.5 954 26.5
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.5e-36 158.3 1082 25.6
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 2.5e-36 158.3 407 35.6
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.3e-36 157.9 378 35.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.4e-36 156.8 432 34.3
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.1e-35 155.2 1233 24.5
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.1e-35 155.2 398 35.7
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.1e-35 155.2 399 35.3
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.1e-35 155.2 329 34.3
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 2.8e-35 154.8 418 35.6
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 6.2e-35 153.7 351 37.0
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.1e-34 152.9 954 27.4
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.1e-34 152.9 894 27.6
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.1e-34 152.9 413 35.4
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.4e-34 152.5 375 36.0
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.8e-34 152.1 953 26.8
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.8e-34 152.1 520 31.5
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.4e-34 151.8 371 35.6
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.1e-34 151.4 945 26.2
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.0e-34 151.0 365 36.4
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.2e-33 149.4 759 28.5
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 1.5e-33 149.1 489 30.5
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.5e-33 149.1 1109 24.3
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.0e-33 148.7 977 26.0
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 5.8e-33 147.1 414 32.9
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.0e-32 146.4 403 34.5
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 2.2e-32 145.2 566 30.0
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.5e-32 143.7 385 33.8
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.4e-31 142.5 201 45.8
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.9e-31 142.1 399 32.8
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.2e-31 141.4 423 33.1
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 9.3e-31 139.8 391 35.5
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 9.3e-31 139.8 812 27.3
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.6e-30 137.5 564 29.6
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 7.9e-30 136.7 448 31.7
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.9e-30 136.7 579 29.9
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.8e-29 135.6 440 33.4
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.8e-29 135.6 464 31.5
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.3e-29 135.2 609 28.1
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.1e-28 132.9 967 26.0
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.3e-28 131.3 348 35.6
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 3.3e-28 131.3 406 32.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 3.3e-28 131.3 888 26.4
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 3.3e-28 131.3 355 34.9
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 9.6e-28 129.8 359 33.7
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 6.9e-26 123.6 1027 24.3
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 3.4e-25 121.3 597 29.5
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.4e-23 115.9 940 25.3
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 7.1e-23 113.6 230 34.3
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.9e-20 105.5 834 24.7
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 9.0e-18 96.7 301 31.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 6.5e-16 90.5 908 23.3
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.9e-13 81.3 460 28.0
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 1.4e-10 72.8 99 49.5
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-09 69.7 634 23.3
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.5e-09 69.3 188 30.3
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.3e-08 66.2 153 40.5
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 1.7e-08 65.9 249 30.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.2e-08 65.5 238 25.6
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 6.5e-08 63.9 70 50.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 8.5e-08 63.5 261 28.7
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 9.4e-07 60.1 214 25.7
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 6.1e-06 57.4 78 41.0


User provided reference genes

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