Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 5.2e-158 561.2 329 100.0
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 3.6e-151 538.5 330 88.8
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 4.9e-148 528.1 330 90.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.6e-141 505.8 337 85.5
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 8.9e-134 480.7 330 78.2
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-133 479.2 330 77.9
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-133 479.2 331 81.6
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-133 479.2 330 77.9
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.6e-133 479.2 330 77.9
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.6e-133 479.2 331 81.6
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 7.5e-133 477.6 329 82.1
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.7e-132 476.5 375 72.8
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 5.4e-131 471.5 331 81.9
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 9.5e-128 460.7 338 82.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 6.2e-127 458.0 338 81.4
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 5.2e-126 454.9 338 80.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 4.6e-122 441.8 367 75.2
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.0e-113 414.1 296 80.4
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 2.5e-112 409.5 341 68.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 9.6e-96 354.4 331 59.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 4.8e-95 352.1 328 57.9
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.4e-94 349.7 328 57.0
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 2.6e-93 346.3 334 59.3
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.7e-92 343.6 330 57.3
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.9e-92 342.8 328 55.8
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 6.4e-92 341.7 334 59.0
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 8.4e-92 341.3 334 58.7
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.2e-90 337.4 334 56.3
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.8e-89 333.6 334 58.7
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-88 330.5 334 56.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.4e-88 328.2 334 56.3
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 9.6e-88 327.8 333 57.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.3e-87 327.4 334 55.1
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-87 327.0 340 56.5
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.6e-87 327.0 333 52.3
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.8e-86 323.6 329 57.1
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.8e-86 323.6 334 55.7
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.3e-86 322.0 334 55.7
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 6.9e-86 321.6 334 53.9
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-85 320.1 338 55.9
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 4.5e-85 318.9 331 53.2
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.0e-84 317.8 335 53.1
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.9e-84 316.2 328 52.4
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-83 314.3 334 52.1
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.9e-83 313.5 328 52.1
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.5e-83 312.0 334 54.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.5e-83 312.0 328 55.2
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.5e-83 312.0 332 57.5
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.2e-82 310.8 331 52.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 6.0e-82 308.5 335 51.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 6.0e-82 308.5 331 51.7
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 7.9e-82 308.1 333 50.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-81 307.8 328 50.0
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 8.7e-81 304.7 325 51.7
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.5e-80 303.1 329 49.5
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.4e-80 301.6 334 54.5
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 7.4e-80 301.6 331 50.2
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.3e-79 300.8 331 52.0
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.6e-79 300.4 341 51.0
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.8e-79 299.7 335 50.1
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.8e-79 299.7 335 50.7
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.3e-79 298.5 335 49.9
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 8.2e-79 298.1 339 49.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.1e-78 297.7 330 49.7
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.4e-78 297.4 336 50.0
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.4e-78 297.4 333 52.6
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 5.3e-78 295.4 339 49.0
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.9e-78 295.0 335 49.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.2e-77 294.3 334 49.1
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.6e-77 293.1 333 47.4
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.4e-77 292.7 336 50.9
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 5.9e-77 292.0 335 48.7
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 7.6e-77 291.6 333 47.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 7.6e-77 291.6 388 46.6
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.7e-76 290.4 329 51.4
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.8e-76 289.3 330 53.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.5e-76 288.1 335 50.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.1e-75 287.7 330 50.3
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-75 287.7 330 51.2
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.9e-75 287.0 356 49.7
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.5e-75 286.6 290 52.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.2e-75 285.8 330 47.9
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.4e-75 284.6 283 54.1
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 9.4e-75 284.6 337 52.8
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.2e-74 284.3 330 47.0
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.1e-74 283.5 335 50.1
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 4.6e-74 282.3 338 53.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 7.9e-74 281.6 343 47.8
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.0e-73 281.2 269 54.3
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.8e-73 280.4 334 47.3
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.0e-73 279.6 277 53.1
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.9e-73 279.3 331 47.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 5.1e-73 278.9 336 51.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.5e-72 277.3 334 47.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 2.5e-72 276.6 296 50.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.3e-72 276.2 327 51.4
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 4.3e-72 275.8 334 50.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 6.3e-71 271.9 334 52.7
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 8.2e-71 271.6 332 49.1
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-70 270.8 335 47.2
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 3.1e-70 269.6 335 49.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 6.9e-70 268.5 344 49.7
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.4e-69 266.2 338 50.9
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 4.5e-69 265.8 339 46.3
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.3e-68 264.2 332 47.6
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.5e-68 261.9 287 48.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.4e-67 260.8 337 45.1
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.2e-67 259.6 334 47.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.6e-66 257.3 301 46.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.7e-66 256.5 370 46.8
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.3e-65 253.4 342 42.4
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.0e-65 253.1 325 45.5
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.9e-65 252.7 337 49.3
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.5e-64 250.8 342 42.4
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.0e-64 250.4 328 44.5
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.3e-64 249.6 342 42.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 9.7e-64 248.1 334 44.6
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-63 247.7 331 43.5
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.7e-63 246.1 326 43.3
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.8e-63 245.7 326 44.2
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-62 244.6 324 45.7
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.8e-62 243.8 310 47.7
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.4e-62 243.4 289 49.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 4.1e-62 242.7 324 45.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 5.3e-62 242.3 331 42.3
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.3e-60 237.7 220 57.7
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.9e-60 236.5 250 52.8
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.9e-59 233.8 175 66.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 5.5e-59 232.3 327 45.6
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 7.4e-56 221.9 332 41.6
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 9.7e-56 221.5 333 45.9
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.7e-55 220.7 320 45.3
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.8e-55 219.2 248 50.0
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.1e-54 218.0 234 50.4
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.2e-51 206.5 304 41.1
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.2e-49 199.1 289 42.9
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.2e-48 198.0 327 40.4
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.0e-48 197.2 161 65.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.6e-48 196.8 335 40.0
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 4.4e-48 196.1 246 45.1
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.7e-47 193.0 236 48.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-47 192.2 162 58.6
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.8e-46 190.7 165 57.0
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.2e-45 188.0 330 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 7.5e-40 168.7 231 41.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.3e-39 165.2 149 53.7
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 7.0e-38 162.2 213 50.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-35 154.5 205 51.2
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.5e-35 154.5 127 59.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.9e-35 154.1 203 52.2
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.5e-35 151.8 162 53.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 3.6e-34 149.8 326 36.8
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.0e-34 148.7 203 47.3
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 5.0e-28 129.4 130 48.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.0e-26 122.1 128 48.4
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.2e-24 118.2 199 45.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 5.8e-24 115.9 99 59.6
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 7.5e-24 115.5 144 43.8
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-19 100.5 136 44.9
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.6e-19 99.4 134 43.3
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.1e-18 97.4 160 38.8
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.8e-18 97.1 139 43.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 4.7e-18 96.3 245 31.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.1e-17 93.6 103 46.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 6.0e-13 79.3 91 41.8
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.6e-12 75.5 66 56.1
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-09 67.4 140 36.4
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 8.9e-09 65.5 59 55.9
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 7.5e-08 62.4 239 26.8
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 9.2e-06 55.5 35 68.6


User provided reference genes

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