Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.2e-228 796.2 403 100.0
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.2e-195 685.6 400 88.2
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.4e-175 618.2 402 81.3
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 9.4e-170 600.5 398 79.4
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.3e-166 590.1 397 79.1
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.2e-135 487.3 401 68.6
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 5.8e-135 485.0 397 69.0
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.9e-133 479.9 401 67.8
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.6e-129 466.8 396 67.2
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.6e-129 466.8 396 67.2
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 5.8e-127 458.4 417 61.4
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 7.1e-125 451.4 281 82.2
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 4.8e-113 412.1 422 56.4
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 2.1e-84 317.0 370 49.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 5.1e-83 312.4 436 43.8
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 6.3e-81 305.4 387 45.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 5.3e-80 302.4 384 44.8
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.4e-77 294.3 396 44.4
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 4.7e-76 289.3 431 42.5
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.0e-75 288.1 425 43.8
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.0e-75 286.6 381 44.9
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.5e-74 284.3 435 40.0
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 2.0e-74 283.9 451 42.1
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.6e-74 283.5 415 42.2
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.3e-74 283.1 380 43.7
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 3.3e-74 283.1 381 44.1
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 9.7e-74 281.6 370 45.4
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 1.3e-73 281.2 391 44.2
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.7e-73 280.8 372 45.7
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.7e-73 280.8 430 41.9
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.2e-73 280.4 433 41.1
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 2.2e-73 280.4 433 41.1
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 3.7e-73 279.6 417 43.4
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 4.8e-73 279.3 412 41.3
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 6.9e-72 275.4 508 38.6
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 6.9e-72 275.4 361 43.2
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 9.1e-72 275.0 436 40.6
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.2e-71 274.6 382 44.5
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.5e-71 274.2 455 38.9
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.5e-71 274.2 383 42.0
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.0e-71 273.9 385 44.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 7.7e-71 271.9 390 43.1
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.3e-70 271.2 387 41.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.9e-69 267.3 360 45.3
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 7.2e-69 265.4 385 42.9
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.6e-68 264.2 379 42.5
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.6e-68 264.2 460 38.5
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.6e-68 263.1 387 41.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 3.6e-68 263.1 389 41.4
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 4.7e-68 262.7 460 38.0
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 6.7e-67 258.8 387 41.9
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 6.7e-67 258.8 449 38.5
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-66 258.1 360 43.3
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.3e-66 256.5 390 42.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 5.7e-66 255.8 368 39.9
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 5.7e-66 255.8 374 42.0
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 5.7e-66 255.8 366 42.1
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 9.7e-66 255.0 361 42.7
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.2e-65 253.8 420 39.8
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.2e-65 253.8 367 41.1
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.2e-65 253.8 371 40.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 2.8e-65 253.4 150 83.3
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 3.7e-65 253.1 364 39.8
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 3.7e-65 253.1 374 41.7
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 8.2e-65 251.9 366 40.2
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.1e-64 251.5 426 39.9
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 4.1e-64 249.6 359 41.2
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 5.3e-64 249.2 368 40.5
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.6e-63 247.7 441 39.0
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 3.5e-63 246.5 387 38.8
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 3.5e-63 246.5 367 41.4
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 7.7e-63 245.4 363 42.7
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 2.2e-62 243.8 367 41.7
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 2.2e-62 243.8 371 39.4
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 5.0e-62 242.7 376 38.8
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 4.2e-61 239.6 369 41.5
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.2e-60 238.0 382 38.7
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.2e-60 238.0 367 39.8
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 4.7e-60 236.1 437 37.1
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.0e-59 235.0 365 40.3
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 4.0e-59 233.0 414 37.2
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.3e-58 229.9 355 42.3
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 5.7e-58 229.2 361 39.6
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.7e-57 226.5 373 39.1
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.8e-57 226.1 375 40.3
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 9.1e-56 221.9 372 37.4
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.2e-55 221.5 372 37.4
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 2.2e-54 217.2 368 37.2
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 8.5e-54 215.3 369 38.5
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.1e-52 210.7 367 37.9
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.4e-51 208.0 483 31.9
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 7.5e-50 202.2 379 38.8
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-49 200.3 366 36.6
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.1e-48 198.4 490 32.4
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 9.1e-48 195.3 557 30.0
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.3e-46 190.7 315 38.7
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 3.8e-46 189.9 206 50.0
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 9.5e-45 185.3 200 52.0
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.2e-44 184.9 190 52.6
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.0e-42 177.6 319 37.3
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.3e-41 174.9 199 47.7
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 6.6e-38 162.5 187 46.0
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 8.6e-38 162.2 160 50.6
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.1e-36 157.5 353 32.3
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 9.2e-32 142.1 352 33.0
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.9e-29 134.4 310 28.4
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 4.3e-29 133.3 352 29.5
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 6.4e-25 119.4 102 56.9
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 6.4e-25 119.4 263 31.6
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 5.4e-24 116.3 370 26.8
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 5.0e-22 109.8 82 64.6
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 4.7e-20 103.2 105 51.4
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.8e-19 101.3 81 55.6
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.0e-19 100.1 345 27.2
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.7e-17 93.6 115 41.7
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 4.9e-17 93.2 80 56.2
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.9e-16 91.3 80 52.5
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.0e-14 85.5 82 45.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 4.7e-12 76.6 87 48.3
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 8.9e-11 72.4 59 55.9
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 8.7e-06 55.8 135 27.4


User provided reference genes

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