Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 9.3e-83 310.1 147 100.0
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 5.1e-81 304.3 147 97.3
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 3.3e-80 301.6 147 97.3
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 3.1e-78 295.0 147 94.6
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 9.3e-75 283.5 147 91.8
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.6e-74 282.7 147 90.5
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 3.9e-73 278.1 147 88.4
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 1.6e-71 272.7 147 87.8
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.1e-70 270.0 147 87.1
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 1.8e-70 269.2 147 87.1
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 1.2e-69 266.5 147 85.7
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 3.8e-68 261.5 148 85.1
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 1.5e-64 249.6 147 79.6
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 2.2e-63 245.7 146 77.4
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 2.2e-63 245.7 146 77.4
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 6.3e-63 244.2 146 78.8
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 8.2e-63 243.8 146 78.8
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 1.1e-62 243.4 146 78.1
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 3.1e-62 241.9 146 76.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.6e-61 238.8 146 77.4
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 3.4e-61 238.4 146 75.3
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 5.9e-61 237.7 144 74.3
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 5.9e-61 237.7 146 74.7
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 7.6e-61 237.3 146 75.3
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 1.0e-60 236.9 146 76.0
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.9e-60 235.3 146 75.3
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 3.2e-59 231.9 148 72.3
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 1.2e-58 229.9 124 83.1
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.6e-58 229.6 146 71.2
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 1.8e-57 226.1 146 72.6
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 1.8e-57 226.1 143 73.4
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 3.0e-57 225.3 146 69.2
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 5.1e-57 224.6 141 72.3
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.7e-57 224.2 146 73.3
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 1.1e-56 223.4 146 70.5
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 5.7e-56 221.1 146 68.5
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 1.7e-55 219.5 145 68.3
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 1.7e-55 219.5 147 67.3
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.7e-55 219.5 128 75.8
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 3.7e-55 218.4 139 74.8
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 4.8e-55 218.0 143 69.2
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 4.8e-55 218.0 146 69.9
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 4.8e-55 218.0 137 72.3
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.8e-55 218.0 143 71.3
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 6.3e-55 217.6 146 69.2
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 6.3e-55 217.6 146 67.1
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 1.1e-54 216.9 146 67.8
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 1.1e-54 216.9 144 70.8
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 1.4e-54 216.5 136 73.5
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 1.8e-54 216.1 146 67.8
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.8e-54 216.1 137 71.5
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 1.8e-54 216.1 134 73.9
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 1.8e-54 216.1 139 71.9
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 1.8e-54 216.1 137 73.0
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 1.8e-54 216.1 146 67.1
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 2.4e-54 215.7 138 71.7
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 4.1e-54 214.9 146 67.1
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 4.1e-54 214.9 124 76.6
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 5.3e-54 214.5 146 67.1
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 5.3e-54 214.5 138 70.3
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 6.9e-54 214.2 124 77.4
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 6.9e-54 214.2 124 76.6
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 9.1e-54 213.8 146 67.1
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 9.1e-54 213.8 147 67.3
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 9.1e-54 213.8 124 75.8
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.2e-53 213.4 144 70.8
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.2e-53 213.4 138 69.6
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 1.2e-53 213.4 137 70.1
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 1.2e-53 213.4 141 68.1
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 1.2e-53 213.4 146 69.9
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.5e-53 213.0 145 64.1
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 1.5e-53 213.0 183 57.4
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 2.0e-53 212.6 125 76.8
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.6e-53 212.2 144 70.8
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 2.6e-53 212.2 133 70.7
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.6e-53 212.2 146 68.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 3.4e-53 211.8 123 75.6
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 3.4e-53 211.8 123 76.4
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 3.4e-53 211.8 146 66.4
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 3.4e-53 211.8 137 68.6
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.5e-53 211.5 146 67.8
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 4.5e-53 211.5 124 75.0
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 4.5e-53 211.5 142 68.3
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 5.9e-53 211.1 125 72.8
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 5.9e-53 211.1 138 68.8
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 7.7e-53 210.7 141 66.7
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 1.0e-52 210.3 125 74.4
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.3e-52 209.9 145 64.1
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 1.7e-52 209.5 146 65.1
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 1.7e-52 209.5 121 80.2
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 2.2e-52 209.1 138 70.3
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 3.8e-52 208.4 123 78.0
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 5.0e-52 208.0 134 72.4
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 5.0e-52 208.0 122 80.3
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 6.5e-52 207.6 121 76.0
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 8.5e-52 207.2 137 66.4
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 8.5e-52 207.2 143 67.1
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 1.1e-51 206.8 135 69.6
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 4.2e-51 204.9 135 69.6
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 9.4e-51 203.8 143 65.7
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.1e-50 202.6 160 61.9
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 4.7e-50 201.4 125 70.4
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 3.0e-49 198.7 135 68.9
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 3.9e-49 198.4 146 65.1
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 1.5e-48 196.4 179 58.1
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 1.3e-47 193.4 207 48.8
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 8.2e-47 190.7 133 64.7
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.7e-44 183.0 117 73.5
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 6.5e-44 181.0 122 69.7
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 9.7e-40 167.2 100 76.0
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 3.5e-37 158.7 92 78.3
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 1.0e-36 157.1 94 76.6
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.0e-36 154.8 94 73.4
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 5.5e-35 151.4 99 69.7
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 1.8e-33 146.4 97 71.1
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 2.3e-33 146.0 94 70.2
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 9.1e-30 134.0 95 62.1
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 1.3e-20 103.6 110 52.7
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 3.3e-19 99.0 66 75.8
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 7.3e-11 71.2 42 69.0
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.0e-09 67.4 35 91.4
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 3.1e-09 65.9 44 63.6
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 5.2e-09 65.1 42 66.7
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 2.0e-08 63.2 35 80.0
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 2.0e-08 63.2 35 80.0
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.4e-06 56.2 52 53.8
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 4.1e-06 55.5 47 57.4


User provided reference genes

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