Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 1.9e-78 296.2 203 100.0
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 2.3e-76 289.3 203 98.0
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 4.3e-62 241.9 203 78.8
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 5.6e-62 241.5 203 78.8
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 2.8e-61 239.2 203 78.3
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 2.8e-61 239.2 203 78.3
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 3.1e-60 235.7 208 82.2
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 8.9e-60 234.2 203 78.3
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 1.5e-59 233.4 203 74.9
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 7.6e-59 231.1 203 75.4
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 4.9e-58 228.4 206 71.4
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 6.0e-56 221.5 201 72.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 7.1e-49 198.0 200 59.0
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 2.4e-36 156.4 204 52.9
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 1.1e-33 147.5 214 45.8
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.9e-31 139.0 215 44.7
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 8.7e-31 137.9 215 44.2
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.1e-30 137.5 213 45.1
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.5e-30 137.1 214 44.9
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 2.5e-30 136.3 215 44.7
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 2.5e-30 136.3 213 44.1
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 3.3e-30 136.0 212 44.8
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 5.7e-30 135.2 209 45.5
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 9.6e-30 134.4 209 43.1
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 1.6e-29 133.7 213 44.6
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 2.1e-29 133.3 210 45.2
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 2.8e-29 132.9 213 44.1
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 8.2e-29 131.3 215 43.3
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 1.4e-28 130.6 212 43.4
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.1e-28 129.4 214 43.5
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 3.1e-28 129.4 214 41.1
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 3.1e-28 129.4 208 42.8
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 3.1e-28 129.4 214 42.1
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 4.1e-28 129.0 212 42.5
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 1.5e-27 127.1 214 43.0
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.5e-27 127.1 214 43.0
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 2.0e-27 126.7 214 41.1
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 2.0e-27 126.7 214 45.3
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.6e-27 126.3 212 40.6
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.5e-27 125.6 214 42.5
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 4.5e-27 125.6 212 41.5
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 5.9e-27 125.2 206 40.8
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 5.9e-27 125.2 208 44.2
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 7.6e-27 124.8 206 41.7
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.3e-26 124.0 210 42.9
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.7e-26 123.6 210 41.4
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.7e-26 123.6 215 40.9
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.9e-26 122.9 206 41.3
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.9e-26 122.9 211 41.7
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.9e-26 122.9 211 41.7
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 3.8e-26 122.5 221 39.4
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 3.8e-26 122.5 213 41.3
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.0e-26 122.1 214 42.1
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 5.0e-26 122.1 213 41.8
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 6.5e-26 121.7 213 40.8
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 6.5e-26 121.7 215 41.9
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 6.5e-26 121.7 220 39.5
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 8.4e-26 121.3 215 40.5
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 3.2e-25 119.4 215 40.0
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 3.2e-25 119.4 209 40.7
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 3.2e-25 119.4 223 39.0
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 4.2e-25 119.0 214 40.2
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 5.5e-25 118.6 213 39.0
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 2.1e-24 116.7 206 41.3
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 4.6e-24 115.5 220 37.7
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 2.3e-23 113.2 210 40.0
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 3.9e-23 112.5 214 37.9
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 8.7e-23 111.3 215 38.1
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.1e-22 110.9 210 39.0
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 4.3e-22 109.0 209 37.8
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 5.7e-22 108.6 215 37.2
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 5.7e-22 108.6 211 39.3
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 3.7e-21 105.9 209 36.8
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 4.8e-21 105.5 211 37.9
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 6.3e-21 105.1 211 38.9
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.1e-20 104.4 211 38.4
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 1.8e-20 103.6 213 37.1
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 9.0e-20 101.3 207 36.2
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.6e-19 99.8 204 46.1
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 5.9e-19 98.6 220 35.0
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 5.9e-19 98.6 208 38.9
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 1.0e-18 97.8 211 36.0
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 1.7e-18 97.1 211 36.5
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 2.9e-18 96.3 221 34.4
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.8e-18 95.9 203 36.9
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 5.0e-18 95.5 212 36.8
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 5.0e-18 95.5 213 35.7
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 5.0e-18 95.5 211 36.0
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 6.5e-18 95.1 211 36.0
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 8.5e-18 94.7 207 35.3
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.4e-17 94.0 211 36.0
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 1.4e-17 94.0 210 35.2
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.9e-17 93.6 212 33.5
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 3.2e-17 92.8 198 38.4
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 3.2e-17 92.8 208 37.5
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 1.2e-16 90.9 211 37.9
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 2.1e-16 90.1 215 33.5
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 3.6e-16 89.4 195 33.8
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 3.6e-16 89.4 221 33.5
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 4.6e-16 89.0 212 34.4
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 4.6e-16 89.0 211 35.5
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 7.9e-16 88.2 206 32.0
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.8e-15 87.0 211 35.1
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.3e-15 86.7 217 30.9
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.0e-15 86.3 217 34.6
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 3.9e-15 85.9 208 32.2
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 6.7e-15 85.1 211 35.1
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 4.3e-14 82.4 112 49.1
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 9.7e-14 81.3 222 31.1
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 3.7e-13 79.3 205 32.2
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.1e-12 77.8 203 33.0
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.8e-12 77.0 207 34.3
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.1e-12 76.3 208 34.1
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 3.1e-12 76.3 206 31.1
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 2.6e-11 73.2 215 31.2
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 3.4e-11 72.8 200 32.5
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 5.9e-11 72.0 193 29.5
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 5.9e-11 72.0 207 31.9
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 7.7e-11 71.6 200 34.0
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 1.7e-10 70.5 202 32.7
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 3.8e-10 69.3 110 45.5
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 6.5e-10 68.6 214 29.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 5.5e-09 65.5 191 33.0
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.2e-08 64.3 211 29.4
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 2.7e-08 63.2 194 29.9
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 3.6e-08 62.8 205 30.7
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 3.9e-07 59.3 34 70.6
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 1.1e-06 57.8 187 27.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.7e-06 55.5 193 29.0


User provided reference genes

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