Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G30220 Arabidopsis lyrata HOM05D010845 ORTHO05D002692 3.4e-89 331.6 169 100.0
AT5G54790 Arabidopsis thaliana HOM05D010845 ORTHO05D002692 3.0e-77 292.0 169 91.7
Carub.0008s1506 Capsella rubella HOM05D010845 ORTHO05D002692 3.9e-69 265.0 173 82.7
Sp6g16730 Schrenkiella parvula HOM05D010845 ORTHO05D002692 6.7e-69 264.2 173 79.2
BcaB08g35844 Brassica carinata HOM05D010845 ORTHO05D002692 3.7e-67 258.5 173 78.6
CARHR268130 Cardamine hirsuta HOM05D010845 ORTHO05D002692 3.1e-66 255.4 176 80.7
A10p12040 Brassica napus HOM05D010845 ORTHO05D002692 5.0e-64 248.1 174 76.4
Thhalv10015916m.g Eutrema salsugineum HOM05D010845 ORTHO05D002692 1.2e-62 243.4 173 75.7
A02p10030 Brassica napus HOM05D010845 ORTHO05D002692 1.4e-61 240.0 173 75.1
BcaB05g22158 Brassica carinata HOM05D010845 ORTHO05D002692 3.0e-61 238.8 173 76.3
BraA02t06071Z Brassica rapa HOM05D010845 ORTHO05D002692 1.1e-60 236.9 173 74.6
BolC2t07773H Brassica oleracea HOM05D010845 ORTHO05D002692 8.2e-59 230.7 175 74.3
BcaC03g14288 Brassica carinata HOM05D010845 ORTHO05D002692 5.3e-58 228.0 172 74.4
BraA10t43305Z Brassica rapa HOM05D010845 ORTHO05D002692 6.3e-51 204.5 170 66.5
BolC9t57396H Brassica oleracea HOM05D010845 ORTHO05D002692 1.7e-48 196.4 143 75.5
C09p45220 Brassica napus HOM05D010845 ORTHO05D002692 5.0e-48 194.9 137 75.2
C02p16670 Brassica napus HOM05D010845 ORTHO05D002692 1.2e-41 173.7 139 72.7
Aa31LG3G10720 Aethionema arabicum HOM05D010845 ORTHO05D002692 1.5e-23 113.6 171 48.5
THA.LOC104813418 Tarenaya hassleriana HOM05D010845 ORTHO05D002692 2.6e-20 102.8 184 42.9
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 5.1e-16 88.6 191 38.2
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 1.1e-15 87.4 196 40.3
TWI38G1873 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 1.5e-15 87.0 189 39.2
Gohir.D01G063800 Gossypium hirsutum HOM05D002846 ORTHO05D002692 5.6e-15 85.1 182 36.8
Gorai.002G084300 Gossypium raimondii HOM05D002846 ORTHO05D002692 5.6e-15 85.1 182 37.4
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 5.6e-15 85.1 189 39.7
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.8e-14 82.8 182 36.3
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 1.1e-13 80.9 202 35.6
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.4e-13 80.5 168 38.7
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 1.8e-13 80.1 193 37.8
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 3.1e-13 79.3 166 35.5
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 3.1e-13 79.3 164 40.2
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 5.2e-13 78.6 163 38.7
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 8.9e-13 77.8 200 36.0
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 1.5e-12 77.0 187 35.3
Thecc.07G046400 Theobroma cacao HOM05D002846 ORTHO05D002692 1.5e-12 77.0 188 37.2
Sp1g37670 Schrenkiella parvula HOM05D010922 ORTHO05D011067 2.0e-12 76.6 200 32.5
Cc05_g13390 Coffea canephora HOM05D002846 ORTHO05D002692 2.6e-12 76.3 188 33.5
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.6e-12 76.3 165 36.4
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 3.4e-12 75.9 200 40.0
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.4e-12 75.5 198 35.9
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 9.9e-12 74.3 206 35.0
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 9.9e-12 74.3 165 35.8
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 9.9e-12 74.3 171 36.3
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 9.9e-12 74.3 198 38.4
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 2.2e-11 73.2 180 40.6
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 2.9e-11 72.8 172 36.0
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.9e-11 72.8 182 35.2
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 2.9e-11 72.8 173 37.6
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 2.9e-11 72.8 173 34.7
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 2.9e-11 72.8 166 38.6
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 3.7e-11 72.4 171 38.6
MELO3C018090.2 Cucumis melo HOM05D002846 ORTHO05D002692 3.7e-11 72.4 174 32.8
FAN21G2316 Fragaria x ananassa HOM05D002846 ORTHO05D002692 3.7e-11 72.4 198 33.3
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 3.7e-11 72.4 190 32.6
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 3.7e-11 72.4 201 37.3
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.9e-11 72.0 167 35.9
Gohir.A13G140400 Gossypium hirsutum HOM05D002846 ORTHO05D002692 4.9e-11 72.0 161 37.9
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 4.9e-11 72.0 186 34.9
BcaC05g27377 Brassica carinata HOM05D010922 ORTHO05D011067 6.4e-11 71.6 191 31.9
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 6.4e-11 71.6 159 39.0
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 6.4e-11 71.6 193 35.8
Psat5g251520 Pisum sativum HOM05D002846 ORTHO05D002692 6.4e-11 71.6 159 33.3
ClCG05G014610 Citrullus lanatus HOM05D002846 ORTHO05D002692 8.3e-11 71.2 186 34.4
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.1e-10 70.9 167 34.7
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 1.1e-10 70.9 185 36.2
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 1.1e-10 70.9 164 36.6
AT1G50930 Arabidopsis thaliana HOM05D010922 ORTHO05D011067 1.4e-10 70.5 198 28.8
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 1.4e-10 70.5 192 36.5
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 1.9e-10 70.1 183 32.2
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 2.4e-10 69.7 216 32.4
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 2.4e-10 69.7 176 37.5
Gorai.013G163000 Gossypium raimondii HOM05D002846 ORTHO05D002692 2.4e-10 69.7 161 37.3
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 2.4e-10 69.7 193 35.8
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 3.2e-10 69.3 168 35.1
BcaB02g11196 Brassica carinata HOM05D010922 ORTHO05D011067 4.1e-10 68.9 192 31.2
BcaB02g11197 Brassica carinata HOM05D010922 ORTHO05D011067 4.1e-10 68.9 192 31.2
AL1G58650 Arabidopsis lyrata HOM05D010922 ORTHO05D011067 5.4e-10 68.6 197 28.9
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 5.4e-10 68.6 187 34.8
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 5.4e-10 68.6 177 36.7
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 5.4e-10 68.6 183 35.0
Sed0016321 Sechium edule HOM05D002846 ORTHO05D002692 5.4e-10 68.6 165 37.0
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 7.1e-10 68.2 188 34.0
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 7.1e-10 68.2 186 34.9
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 7.1e-10 68.2 184 37.5
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 9.2e-10 67.8 201 35.3
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 9.2e-10 67.8 182 36.8
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 1.2e-09 67.4 182 35.7
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.2e-09 67.4 172 34.9
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 1.2e-09 67.4 172 34.9
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.6e-09 67.0 159 35.2
A06p02810 Brassica napus HOM05D010922 ORTHO05D011067 2.1e-09 66.6 183 30.6
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 2.1e-09 66.6 180 36.7
DCAR_019769 Daucus carota HOM05D002846 ORTHO05D002692 2.1e-09 66.6 162 34.6
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.1e-09 66.6 175 35.4
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 2.1e-09 66.6 166 36.1
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 2.7e-09 66.2 189 36.5
Prupe.4G205800 Prunus persica HOM05D002846 ORTHO05D002692 2.7e-09 66.2 167 35.3
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 2.7e-09 66.2 182 37.4
EL10Ac4g07933 Beta vulgaris HOM05D019198 ORTHO05D002692 3.5e-09 65.9 204 30.9
C05p33110 Brassica napus HOM05D010922 ORTHO05D011067 3.5e-09 65.9 191 30.9
BolC5t32043H Brassica oleracea HOM05D010922 ORTHO05D011067 3.5e-09 65.9 191 30.9
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 3.5e-09 65.9 179 34.1
Actinidia05119 Actinidia chinensis HOM05D002846 ORTHO05D002692 4.6e-09 65.5 183 33.9
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 4.6e-09 65.5 222 31.1
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 4.6e-09 65.5 164 36.0
HanXRQChr05g0159181 Helianthus annuus HOM05D002846 ORTHO05D002692 6.0e-09 65.1 166 31.9
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 6.0e-09 65.1 165 37.0
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 6.0e-09 65.1 154 37.0
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 6.0e-09 65.1 173 37.0
BcaB07g33533 Brassica carinata HOM05D010922 ORTHO05D011067 7.8e-09 64.7 182 29.7
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 7.8e-09 64.7 183 37.2
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 7.8e-09 64.7 189 36.5
Gohir.D13G145200 Gossypium hirsutum HOM05D002846 ORTHO05D002692 7.8e-09 64.7 157 36.3
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 7.8e-09 64.7 178 34.3
ECA246G4222 Erigeron canadensis HOM05D002846 ORTHO05D002692 1.0e-08 64.3 148 32.4
Thhalv10011976m.g Eutrema salsugineum HOM05D010922 ORTHO05D011067 1.0e-08 64.3 194 28.9
MD03G1209200 Malus domestica HOM05D002846 ORTHO05D002692 1.0e-08 64.3 197 32.5
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 1.0e-08 64.3 196 37.8
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 1.0e-08 64.3 152 36.8
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 1.3e-08 63.9 198 35.9
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 1.7e-08 63.5 159 30.8
BraA06t23488Z Brassica rapa HOM05D010922 ORTHO05D011067 1.7e-08 63.5 183 30.6
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 1.7e-08 63.5 216 32.4
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 1.7e-08 63.5 166 38.6
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 1.7e-08 63.5 181 34.3
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 1.7e-08 63.5 199 33.2
C06p06090 Brassica napus HOM05D010922 ORTHO05D011067 3.0e-08 62.8 183 31.1
BolC6t35722H Brassica oleracea HOM05D010922 ORTHO05D011067 3.0e-08 62.8 183 31.1
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.0e-08 62.8 159 34.6
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 3.0e-08 62.8 196 33.7
TWI39G1011 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 3.0e-08 62.8 191 34.6
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 3.0e-08 62.8 166 33.7
CARHR040970 Cardamine hirsuta HOM05D010922 ORTHO05D011067 3.9e-08 62.4 194 28.4
CiPaw.11G185800 Carya illinoinensis HOM05D002846 ORTHO05D002692 3.9e-08 62.4 194 32.5
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 3.9e-08 62.4 165 33.9
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 3.9e-08 62.4 184 35.9
ClCG02G008550 Citrullus lanatus HOM05D002846 ORTHO05D002692 5.1e-08 62.0 152 34.2
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 5.1e-08 62.0 188 34.0
Peaxi162Scf00407g00210 Petunia axillaris HOM05D002846 ORTHO05D002692 5.1e-08 62.0 180 33.9
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 6.6e-08 61.6 163 33.1
A05p19850 Brassica napus HOM05D010922 ORTHO05D011067 8.6e-08 61.2 192 30.2
BraA05t20890Z Brassica rapa HOM05D010922 ORTHO05D011067 8.6e-08 61.2 192 30.2
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 8.6e-08 61.2 159 38.4
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 8.6e-08 61.2 180 35.0
Cpa.g.c34122 Carica papaya HOM05D002846 ORTHO05D002692 1.1e-07 60.8 155 36.8
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 1.1e-07 60.8 196 34.7
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 1.5e-07 60.5 206 32.0
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 1.5e-07 60.5 189 31.7
Eucgr.F00971 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.9e-07 60.1 152 35.5
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 1.9e-07 60.1 176 34.7
Carub.0001s3987 Capsella rubella HOM05D010922 ORTHO05D011067 2.5e-07 59.7 195 28.7
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.5e-07 59.7 189 33.9
BcaC09g50965 Brassica carinata HOM05D010509 ORTHO05D011067 3.3e-07 59.3 174 35.1
COL.COLO4_09606 Corchorus olitorius HOM05D002846 ORTHO05D002692 3.3e-07 59.3 137 36.5
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 3.3e-07 59.3 197 33.5
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 3.3e-07 59.3 170 37.1
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 4.3e-07 58.9 171 35.1
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 4.3e-07 58.9 171 35.1
Gorai.005G150200 Gossypium raimondii HOM05D002846 ORTHO05D002692 4.3e-07 58.9 171 33.9
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 4.3e-07 58.9 167 33.5
Nn1g03606 Nelumbo nucifera HOM05D002846 ORTHO05D002692 5.6e-07 58.5 140 38.6
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 7.3e-07 58.2 180 33.9
PSO675G7460 Papaver somniferum HOM05D002846 ORTHO05D002692 9.5e-07 57.8 207 30.4
AT3G20557 Arabidopsis thaliana HOM05D010509 ORTHO05D011067 1.2e-06 57.4 172 34.9
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.2e-06 57.4 169 34.3
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 1.2e-06 57.4 141 36.9
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.2e-06 57.4 158 34.2
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 1.6e-06 57.0 150 34.7
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 1.6e-06 57.0 135 35.6
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.6e-06 57.0 164 32.9
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 2.1e-06 56.6 203 31.0
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 2.8e-06 56.2 156 31.4
C01p18680 Brassica napus HOM05D010509 ORTHO05D011067 2.8e-06 56.2 172 34.3
BolC1t01796H Brassica oleracea HOM05D010509 ORTHO05D011067 2.8e-06 56.2 172 34.3
AUR62008775 Chenopodium quinoa HOM05D002846 ORTHO05D002692 2.8e-06 56.2 147 29.9
BcaC09g49001 Brassica carinata HOM05D010509 ORTHO05D011067 3.6e-06 55.8 172 33.7
C01p43630 Brassica napus HOM05D010509 ORTHO05D011067 3.6e-06 55.8 172 33.7
BolC1t04323H Brassica oleracea HOM05D010509 ORTHO05D011067 3.6e-06 55.8 172 33.7
THA.LOC104816923 Tarenaya hassleriana HOM05D010922 ORTHO05D011067 3.6e-06 55.8 174 33.3
AUR62020528 Chenopodium quinoa HOM05D002846 ORTHO05D002692 4.7e-06 55.5 195 29.7
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 4.7e-06 55.5 171 35.1
Atru.chr2.3239 Acer truncatum HOM05D002846 ORTHO05D002692 6.2e-06 55.1 97 37.1
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 6.2e-06 55.1 160 32.5
EL10Ac9g20666 Beta vulgaris HOM05D002846 ORTHO05D002692 8.1e-06 54.7 194 33.0
DCAR_010032 Daucus carota HOM05D002846 ORTHO05D002692 8.1e-06 54.7 168 31.5
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 8.1e-06 54.7 157 31.2


User provided reference genes

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