Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 4.1e-51 204.5 109 100.0
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.4e-45 183.7 108 89.8
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.3e-44 183.0 108 89.8
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.8e-43 179.1 108 86.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 2.0e-42 175.6 108 84.3
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 3.8e-41 171.4 107 83.2
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 3.8e-41 171.4 108 83.3
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 6.5e-41 170.6 108 81.5
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 6.5e-41 170.6 108 81.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 6.5e-41 170.6 108 82.4
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 6.5e-41 170.6 108 82.4
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 6.5e-41 170.6 108 82.4
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 6.5e-41 170.6 108 82.4
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.9e-40 169.1 108 81.5
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 2.5e-40 168.7 107 82.2
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 3.0e-38 161.8 99 83.8
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 4.4e-37 157.9 99 81.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 7.5e-37 157.1 100 80.0
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.7e-36 156.0 99 81.8
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.8e-36 154.5 99 81.8
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.8e-36 154.5 97 81.4
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 6.3e-36 154.1 99 79.8
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 8.2e-36 153.7 99 80.8
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 8.2e-36 153.7 99 79.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.2e-36 153.7 99 79.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.2e-36 153.7 99 79.8
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.1e-35 153.3 99 79.8
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.1e-35 153.3 100 82.0
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 3.1e-35 151.8 99 78.8
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 4.1e-35 151.4 95 82.1
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 4.1e-35 151.4 97 80.4
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 4.1e-35 151.4 100 81.0
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 9.1e-35 150.2 99 79.8
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.6e-34 149.4 99 77.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.6e-34 149.4 99 77.8
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.7e-34 148.7 99 77.8
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 2.7e-34 148.7 97 78.4
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.7e-34 148.7 99 79.8
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.5e-34 147.9 97 79.4
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 4.5e-34 147.9 99 75.8
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 5.9e-34 147.5 97 78.4
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.0e-33 146.7 99 76.8
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.0e-33 146.7 99 78.8
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.3e-33 146.4 97 76.3
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-33 146.4 97 76.3
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-33 146.4 97 76.3
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-33 146.4 97 76.3
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.3e-33 146.4 99 76.8
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.3e-33 146.4 95 76.8
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.2e-33 145.6 99 73.7
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.9e-33 145.2 106 71.7
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 2.9e-33 145.2 95 78.9
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.9e-33 145.2 99 79.8
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 2.9e-33 145.2 99 76.8
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.9e-33 145.2 99 78.8
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.8e-33 144.8 105 71.4
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 5.0e-33 144.4 90 82.2
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 5.0e-33 144.4 99 74.7
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 6.5e-33 144.1 96 76.0
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 6.5e-33 144.1 95 77.9
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 8.5e-33 143.7 90 80.0
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 8.5e-33 143.7 99 75.8
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.1e-32 143.3 93 79.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.1e-32 143.3 96 76.0
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.1e-32 143.3 98 73.5
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.1e-32 143.3 97 73.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.5e-32 142.9 96 76.0
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 1.9e-32 142.5 93 78.5
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.9e-32 142.5 106 71.7
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.9e-32 142.5 95 78.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.9e-32 142.5 96 76.0
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.9e-32 142.5 93 78.5
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 2.5e-32 142.1 97 73.2
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.5e-32 141.0 93 79.6
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.5e-32 141.0 99 73.7
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 5.5e-32 141.0 100 72.0
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 5.5e-32 141.0 93 79.6
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 7.2e-32 140.6 99 73.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 7.2e-32 140.6 93 75.3
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 7.2e-32 140.6 107 67.3
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.2e-31 139.8 99 74.7
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.2e-31 139.8 99 74.7
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 1.6e-31 139.4 90 76.7
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 1.6e-31 139.4 94 76.6
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.1e-31 139.0 99 72.7
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 2.1e-31 139.0 93 75.3
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.1e-31 139.0 90 78.9
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 2.1e-31 139.0 93 76.3
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.1e-31 139.0 97 70.1
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.1e-31 139.0 97 70.1
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.6e-31 138.3 99 72.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 3.6e-31 138.3 107 66.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 4.7e-31 137.9 96 74.0
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 4.7e-31 137.9 107 66.4
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 8.0e-31 137.1 99 73.7
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 8.0e-31 137.1 96 74.0
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 8.0e-31 137.1 93 74.2
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.0e-30 136.7 97 72.2
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.0e-30 136.7 99 70.7
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.4e-30 136.3 99 72.7
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.4e-30 136.3 99 72.7
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.4e-30 136.3 99 68.7
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.8e-30 136.0 98 73.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.8e-30 136.0 99 69.7
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.8e-30 136.0 106 67.9
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.3e-30 135.6 96 70.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 3.0e-30 135.2 96 71.9
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 4.0e-30 134.8 111 67.6
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 5.2e-30 134.4 97 73.2
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.5e-29 132.9 93 76.3
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.3e-28 129.8 99 66.7
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.7e-28 128.3 130 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.8e-27 125.9 99 64.6
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 5.9e-26 120.9 100 66.0
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 6.5e-25 117.5 74 78.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.5e-24 115.5 102 55.9
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 4.7e-23 111.3 71 80.3
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 6.8e-22 107.5 87 59.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 8.9e-22 107.1 72 73.6
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 8.9e-22 107.1 72 75.0
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 7.5e-21 104.0 157 42.7
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 9.2e-19 97.1 105 54.3
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.0e-18 95.9 70 71.4
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 2.9e-17 92.0 61 72.1
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.8e-17 91.7 57 78.9
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 8.0e-15 84.0 55 76.4
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 5.4e-11 71.2 108 46.3
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 7.0e-11 70.9 63 54.0
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.2e-10 70.1 88 47.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 9.5e-08 60.5 41 73.2
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.6e-07 59.7 40 72.5
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 2.8e-07 58.9 62 53.2
BraA10t43048Z Brassica rapa HOM05D005135 ORTHO05D005810 1.8e-06 56.2 29 93.1
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.2e-06 54.7 38 71.1


User provided reference genes

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