Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.0e-60 236.5 117 100.0
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.7e-32 142.1 109 67.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.8e-32 140.6 109 67.0
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-31 139.4 109 65.1
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-31 139.4 109 65.1
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-31 139.0 109 64.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.3e-31 139.0 109 64.2
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.9e-31 138.7 98 69.4
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 3.8e-31 138.3 109 66.1
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.8e-31 138.3 109 65.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 6.6e-31 137.5 109 64.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 7.3e-30 134.0 109 63.3
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.0e-28 130.2 100 65.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.0e-28 130.2 100 65.0
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.4e-28 129.8 101 63.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.3e-28 129.0 98 66.3
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.3e-28 129.0 106 63.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.3e-28 129.0 103 64.1
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.3e-28 129.0 98 64.3
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.0e-28 128.6 98 65.3
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.0e-28 128.3 98 66.3
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.0e-28 128.3 98 64.3
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 4.0e-28 128.3 98 65.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.0e-28 128.3 98 66.3
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 6.8e-28 127.5 98 65.3
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 6.8e-28 127.5 98 64.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 6.8e-28 127.5 98 65.3
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.9e-28 127.1 101 64.4
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 8.9e-28 127.1 98 63.3
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.9e-28 127.1 98 64.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 8.9e-28 127.1 98 64.3
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 8.9e-28 127.1 95 65.3
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.2e-27 126.7 103 63.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.5e-27 126.3 95 67.4
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.5e-27 126.3 103 64.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.5e-27 126.3 98 64.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.5e-27 126.3 100 66.0
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.5e-27 126.3 100 66.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.5e-27 126.3 98 64.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.0e-27 125.9 103 63.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.6e-27 125.6 98 63.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 3.4e-27 125.2 104 61.5
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.4e-27 124.8 98 63.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 4.4e-27 124.8 102 62.7
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 5.8e-27 124.4 96 63.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.8e-27 124.4 102 63.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.8e-27 124.4 102 63.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.8e-27 124.4 102 63.7
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.8e-27 124.4 102 63.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 5.8e-27 124.4 95 64.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 7.5e-27 124.0 98 63.3
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.5e-27 124.0 100 62.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 7.5e-27 124.0 95 64.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.5e-27 124.0 95 64.2
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 7.5e-27 124.0 95 63.2
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 7.5e-27 124.0 95 63.2
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 7.5e-27 124.0 95 66.3
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 7.5e-27 124.0 101 61.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 9.8e-27 123.6 94 64.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 9.8e-27 123.6 100 64.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.3e-26 123.2 98 60.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-26 123.2 98 62.2
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-26 123.2 95 64.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.3e-26 123.2 101 64.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.3e-26 123.2 94 64.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.7e-26 122.9 95 65.3
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.7e-26 122.9 95 65.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.7e-26 122.9 98 62.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.7e-26 122.9 98 63.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.7e-26 122.9 95 64.2
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-26 122.5 98 62.2
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.2e-26 122.5 98 62.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.2e-26 122.5 98 63.3
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.2e-26 122.5 98 62.2
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.9e-26 122.1 98 60.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.9e-26 122.1 98 61.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.9e-26 122.1 95 63.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.9e-26 122.1 95 64.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.7e-26 121.7 98 63.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.7e-26 121.7 95 62.1
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.9e-26 121.3 98 62.2
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.9e-26 121.3 98 62.2
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 4.9e-26 121.3 95 61.1
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.9e-26 121.3 95 63.2
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 4.9e-26 121.3 95 63.2
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 6.4e-26 120.9 94 63.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.4e-26 120.9 98 60.2
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.4e-26 120.9 98 60.2
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 8.3e-26 120.6 98 59.2
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 8.3e-26 120.6 98 59.2
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-25 120.2 109 59.6
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.4e-25 119.8 102 59.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.9e-25 119.4 95 61.1
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.9e-25 119.4 103 57.3
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.9e-25 119.4 95 62.1
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.9e-25 119.4 95 62.1
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.9e-25 119.4 102 59.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 4.1e-25 118.2 98 60.2
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.0e-25 117.5 98 61.2
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 7.0e-25 117.5 100 61.0
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.2e-25 117.1 95 61.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 9.2e-25 117.1 101 56.4
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.2e-24 116.7 95 60.0
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.2e-24 116.7 102 60.8
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.0e-24 115.9 95 58.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.7e-24 115.5 95 60.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.7e-24 115.5 93 62.4
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.7e-24 115.5 100 58.0
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 4.6e-24 114.8 89 66.3
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.0e-24 114.4 111 52.3
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 7.8e-24 114.0 95 58.9
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.3e-23 113.2 95 58.9
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.3e-23 112.5 100 56.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.9e-23 111.7 95 56.8
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 5.0e-23 111.3 94 58.5
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 6.6e-23 110.9 95 58.9
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 8.6e-23 110.5 100 58.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.1e-22 110.2 100 56.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.9e-22 109.4 95 55.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.5e-22 109.0 94 57.4
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.5e-22 109.0 95 55.8
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 7.3e-22 107.5 95 55.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.6e-21 105.1 95 56.8
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.2e-21 104.4 122 45.9
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.9e-20 100.5 97 53.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 5.8e-19 97.8 80 60.0
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.4e-17 93.2 97 47.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 7.0e-17 90.9 78 59.0
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 7.0e-17 90.9 78 59.0
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 7.0e-17 90.9 49 79.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 9.2e-17 90.5 93 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.1e-16 89.4 98 48.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.3e-15 86.7 93 49.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.0e-15 85.5 76 56.6
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 5.1e-15 84.7 53 69.8
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.9e-14 82.8 48 70.8
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.5e-14 82.4 85 51.8
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.4e-11 72.0 80 46.2
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 3.4e-11 72.0 53 62.3
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-09 67.0 46 63.0
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-08 62.0 95 37.9
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 6.6e-07 57.8 55 52.7
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 8.6e-07 57.4 27 85.2
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 8.6e-07 57.4 27 85.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.3e-06 55.5 33 72.7


User provided reference genes

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