Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 7.3e-161 570.5 283 100.0
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.6e-155 552.7 283 96.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.1e-151 540.0 283 95.4
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.4e-151 538.9 283 94.7
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 6.9e-151 537.3 283 95.1
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-150 536.2 283 94.3
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 9.9e-150 533.5 283 93.3
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.2e-149 532.3 283 92.9
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 8.4e-149 530.4 283 92.9
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-148 530.0 283 92.9
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-148 529.6 283 92.2
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.4e-148 529.6 283 92.2
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.9e-148 529.3 283 92.9
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 2.1e-147 525.8 275 94.2
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 2.7e-147 525.4 283 92.2
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 9.3e-140 500.4 284 88.4
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.9e-132 476.1 283 83.7
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.3e-132 473.8 283 81.6
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 9.3e-132 473.8 285 82.5
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.2e-131 473.4 283 81.3
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 4.6e-131 471.5 288 80.9
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.9e-130 468.4 283 80.6
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.3e-129 465.3 283 80.2
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 2.2e-128 462.6 285 80.7
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 2.2e-128 462.6 285 80.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 6.3e-128 461.1 283 80.2
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 6.9e-127 457.6 286 79.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 6.9e-127 457.6 286 79.0
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 6.9e-127 457.6 285 79.6
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 3.4e-126 455.3 286 79.7
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 3.4e-126 455.3 285 78.9
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 3.4e-126 455.3 285 78.9
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 5.1e-122 441.4 277 79.4
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.6e-115 419.9 278 74.5
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.2e-107 393.7 283 67.1
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 2.8e-104 382.5 288 65.3
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.1e-103 380.6 284 65.5
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 9.1e-103 377.5 287 64.1
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 4.5e-102 375.2 283 65.7
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.3e-101 373.6 284 63.7
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.7e-101 373.2 287 63.4
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.2e-101 372.9 284 63.4
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.9e-101 372.5 287 64.5
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.8e-101 372.1 280 65.4
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 5.0e-101 371.7 287 65.2
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 6.5e-101 371.3 280 64.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 8.5e-101 370.9 284 63.7
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.9e-100 369.8 283 64.3
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.2e-100 368.6 283 65.0
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.2e-100 368.6 284 65.8
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.5e-100 368.2 283 65.4
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 7.2e-100 367.9 283 64.0
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 9.4e-100 367.5 283 63.6
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.4e-100 367.5 283 65.0
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.6e-99 365.5 284 62.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 8.0e-99 364.4 279 63.8
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 8.0e-99 364.4 290 61.7
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.4e-98 363.6 283 64.0
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 1.8e-98 363.2 283 61.5
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.8e-98 363.2 283 62.9
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 2.3e-98 362.8 286 62.9
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 6.8e-98 361.3 285 61.1
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 8.8e-98 360.9 283 62.5
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 1.5e-97 360.1 288 64.9
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 2.6e-97 359.4 283 62.5
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 3.4e-97 359.0 283 61.1
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 4.4e-97 358.6 280 62.9
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 4.4e-97 358.6 279 63.8
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 5.7e-97 358.2 284 61.6
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 7.5e-97 357.8 288 60.8
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.8e-97 357.5 286 61.9
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.3e-96 357.1 286 61.5
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.7e-96 356.7 284 61.3
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.8e-96 355.9 286 61.2
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.7e-96 355.5 287 61.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 3.7e-96 355.5 280 61.1
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 8.3e-96 354.4 282 60.6
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 2.4e-95 352.8 284 61.6
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.4e-95 352.8 283 61.8
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 3.1e-95 352.4 280 62.9
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 5.4e-95 351.7 282 59.9
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 9.1e-95 350.9 281 60.9
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 9.1e-95 350.9 284 60.9
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.2e-94 350.5 284 61.6
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.6e-94 350.1 283 61.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.6e-94 350.1 284 59.5
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 2.0e-94 349.7 286 60.8
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.7e-94 349.4 280 61.4
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 3.5e-94 349.0 243 67.1
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.0e-93 347.4 283 60.4
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.3e-93 347.1 283 60.8
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 2.3e-93 346.3 243 65.8
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.3e-93 346.3 284 61.6
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.3e-93 346.3 284 60.9
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 5.0e-93 345.1 284 61.3
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.5e-93 344.7 290 58.3
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 6.5e-93 344.7 284 60.6
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 8.6e-93 344.4 284 61.3
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.1e-92 344.0 285 60.4
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 1.5e-92 343.6 285 57.5
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.9e-92 343.2 283 59.4
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 2.5e-92 342.8 285 57.2
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.3e-92 342.4 287 58.2
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.3e-92 342.4 290 57.6
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 3.3e-92 342.4 280 61.1
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.3e-92 342.4 284 58.8
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 4.2e-92 342.0 283 59.7
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 7.2e-92 341.3 284 60.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 7.2e-92 341.3 283 58.3
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 9.5e-92 340.9 285 57.2
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.1e-91 339.7 283 59.0
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.8e-91 339.3 287 58.2
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 2.8e-91 339.3 285 57.9
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 2.8e-91 339.3 285 57.9
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 2.8e-91 339.3 284 58.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.8e-91 339.3 283 59.7
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.0e-90 337.4 283 60.8
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 4.0e-90 335.5 281 59.4
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 8.9e-90 334.3 287 55.7
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 9.8e-89 330.9 281 58.0
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.3e-88 330.5 283 57.2
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 1.7e-88 330.1 313 54.3
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.7e-88 330.1 283 58.0
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 2.2e-88 329.7 281 58.0
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.8e-88 329.3 283 55.8
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 4.9e-88 328.6 283 56.5
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.6e-86 323.6 284 56.7
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.0e-86 323.2 243 64.2
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 3.5e-86 322.4 283 56.9
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.0e-85 320.9 243 61.7
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 6.6e-85 318.2 287 55.4
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 6.6e-85 318.2 302 53.3
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 3.6e-83 312.4 283 56.5
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 1.4e-82 310.5 281 54.4
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.8e-82 310.1 286 57.0
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.8e-82 310.1 284 54.6
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.0e-82 308.9 286 57.3
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.2e-82 308.5 284 55.3
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 5.2e-82 308.5 279 55.2
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 5.8e-81 305.1 283 53.0
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.4e-79 300.4 266 57.5
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 4.6e-78 295.4 284 52.8
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 6.0e-78 295.0 284 51.1
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.3e-76 288.9 276 52.9
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 2.8e-75 286.2 243 57.2
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 4.7e-75 285.4 185 71.4
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 5.8e-73 278.5 285 49.5
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.6e-69 264.6 255 54.5
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 9.5e-68 261.2 140 91.4
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 3.6e-67 259.2 140 90.7
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 3.6e-67 259.2 140 90.7
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.4e-66 257.3 197 59.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 2.0e-65 253.4 245 49.0
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 7.8e-62 241.5 239 49.8
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 8.1e-59 231.5 241 44.8
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 4.9e-56 222.2 287 40.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 9.2e-55 218.0 186 55.9
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.1e-50 203.0 189 52.4
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 6.0e-46 188.7 166 53.0
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.7e-45 187.2 169 56.8
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.9e-44 183.7 208 45.2
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.3e-44 183.0 168 56.0
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.8e-43 179.1 186 55.4
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.1e-42 177.9 253 43.5
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 4.9e-40 169.1 115 73.0
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.1e-38 163.7 241 33.2
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.8e-27 126.7 74 85.1
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-20 102.1 124 38.7
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.6e-14 84.3 191 31.4


User provided reference genes

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