Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G29300 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 1.1e-59 233.0 108 100.0
AT5G54150 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.8e-38 162.5 125 66.4
Carub.0008s1445 Capsella rubella HOM05D001799 ORTHO05D001655 1.5e-34 149.4 125 60.8
Thhalv10015504m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 2.1e-31 139.0 95 73.7
AL8G29290 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 5.7e-29 131.0 120 56.7
A10p11470 Brassica napus HOM05D001799 ORTHO05D001655 9.7e-29 130.2 117 56.4
BraA10t43241Z Brassica rapa HOM05D001799 ORTHO05D001655 9.7e-29 130.2 117 56.4
BcaC04g20368 Brassica carinata HOM05D001799 ORTHO05D001655 4.1e-27 124.8 117 56.4
BcaC04g20370 Brassica carinata HOM05D001799 ORTHO05D001655 4.1e-27 124.8 117 56.4
C09p44430 Brassica napus HOM05D001799 ORTHO05D001655 4.1e-27 124.8 117 56.4
BolC9t57311H Brassica oleracea HOM05D001799 ORTHO05D001655 4.1e-27 124.8 117 56.4
BcaB01g04279 Brassica carinata HOM05D001799 ORTHO05D001655 3.8e-25 118.2 117 53.0
AT5G54148 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.1e-24 116.7 102 56.9
CARHR267350 Cardamine hirsuta HOM05D001799 ORTHO05D001655 7.2e-24 114.0 131 48.9
Thhalv10015984m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 1.2e-23 113.2 103 54.4
C09p44410 Brassica napus HOM05D001799 ORTHO05D001655 1.4e-22 109.8 100 57.0
BcaB08g35772 Brassica carinata HOM05D001799 ORTHO05D001655 2.0e-21 105.9 139 43.2
Aa31LG3G9870 Aethionema arabicum HOM05D001799 ORTHO05D001655 2.6e-21 105.5 131 45.0
AT4G27660 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 2.2e-20 102.4 116 48.3
QL09p006905 Quercus lobata HOM05D001799 ORTHO05D001655 2.2e-20 102.4 125 41.6
THA.LOC104811886 Tarenaya hassleriana HOM05D001799 ORTHO05D001655 2.2e-20 102.4 150 39.3
Carub.0007s1316 Capsella rubella HOM05D001799 ORTHO05D001655 2.8e-20 102.1 130 43.8
Sp7g25630 Schrenkiella parvula HOM05D001799 ORTHO05D001655 4.8e-20 101.3 117 47.0
AL7G25010 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 1.1e-19 100.1 116 48.3
Thecc.03G209600 Theobroma cacao HOM05D001799 ORTHO05D001655 1.1e-19 100.1 119 45.4
Thhalv10026379m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 2.4e-19 99.0 146 41.1
Gohir.A11G016800 Gossypium hirsutum HOM05D001799 ORTHO05D001655 3.1e-19 98.6 118 44.1
Gohir.D11G016600 Gossypium hirsutum HOM05D001799 ORTHO05D001655 3.1e-19 98.6 118 44.1
Gorai.007G017400 Gossypium raimondii HOM05D001799 ORTHO05D001655 3.1e-19 98.6 118 44.1
Sp6g16200 Schrenkiella parvula HOM05D001799 ORTHO05D001655 2.0e-18 95.9 63 73.0
BolC3t14142H Brassica oleracea HOM05D001799 ORTHO05D001655 2.6e-18 95.5 170 37.1
arahy.Tifrunner.gnm1.ann1.L3LS3U Arachis hypogaea HOM05D001799 ORTHO05D001655 3.4e-18 95.1 97 44.3
Duzib205G0886 Durio zibethinus HOM05D001799 ORTHO05D001655 3.4e-18 95.1 128 42.2
BcaB01g04276 Brassica carinata HOM05D001799 ORTHO05D001655 4.5e-18 94.7 165 37.6
BcaC01g06286 Brassica carinata HOM05D001799 ORTHO05D001655 4.5e-18 94.7 165 37.6
BcaC09g50556 Brassica carinata HOM05D001799 ORTHO05D001655 5.9e-18 94.4 115 46.1
C01p23980 Brassica napus HOM05D001799 ORTHO05D001655 5.9e-18 94.4 115 46.1
A01p19050 Brassica napus HOM05D001799 ORTHO05D001655 7.7e-18 94.0 115 46.1
A03p14790 Brassica napus HOM05D001799 ORTHO05D001655 7.7e-18 94.0 155 40.0
BraA01t01848Z Brassica rapa HOM05D001799 ORTHO05D001655 7.7e-18 94.0 115 46.1
BraA03t10772Z Brassica rapa HOM05D001799 ORTHO05D001655 7.7e-18 94.0 155 40.0
BolC1t02348H Brassica oleracea HOM05D001799 ORTHO05D001655 1.3e-17 93.2 115 45.2
Haze_00305 Corylus avellana HOM05D000001 ORTHO05D001653 1.3e-17 93.2 143 38.5
C07p55660 Brassica napus HOM05D001799 ORTHO05D001655 2.9e-17 92.0 135 43.7
BolC7t46046H Brassica oleracea HOM05D001799 ORTHO05D001655 2.9e-17 92.0 135 43.7
A03p57450 Brassica napus HOM05D001799 ORTHO05D001655 1.1e-16 90.1 140 43.6
Ca_16784_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 1.4e-16 89.7 133 37.6
Ca_16800_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 1.4e-16 89.7 133 37.6
EL10Ac3g05164 Beta vulgaris HOM05D001799 ORTHO05D001655 1.9e-16 89.4 98 45.9
Nitab4.5_0000021g0110 Nicotiana tabacum HOM05D001799 ORTHO05D001655 1.9e-16 89.4 123 39.8
BcaNung01644 Brassica carinata HOM05D001799 ORTHO05D001655 3.2e-16 88.6 118 44.9
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 3.2e-16 88.6 123 41.5
Dinv29206 Davidia involucrata HOM05D001799 ORTHO05D001655 4.2e-16 88.2 123 41.5
MD07G1300600 Malus domestica HOM05D001799 ORTHO05D001655 4.2e-16 88.2 131 36.6
Peaxi162Scf00912g00142 Petunia axillaris HOM05D001799 ORTHO05D001655 4.2e-16 88.2 103 42.7
Hund21068 Selenicereus undatus HOM05D001799 ORTHO05D001655 4.2e-16 88.2 92 44.6
TAR374G0661 Trochodendron aralioides HOM05D001799 ORTHO05D001655 4.2e-16 88.2 149 39.6
Ciclev10022593m.g Citrus clementina HOM05D001799 ORTHO05D001655 5.5e-16 87.8 126 36.5
CSS0016235 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 9.4e-16 87.0 117 41.0
Cfa016149 Carpinus fangiana HOM05D000001 ORTHO05D001655 1.2e-15 86.7 131 37.4
MD07G1300800 Malus domestica HOM05D001799 ORTHO05D001655 1.2e-15 86.7 133 36.1
BraA03t14813Z Brassica rapa HOM05D001799 ORTHO05D001655 2.1e-15 85.9 115 45.2
Cfa016150 Carpinus fangiana HOM05D001799 ORTHO05D001655 2.1e-15 85.9 134 38.8
MD07G1211900 Malus domestica HOM05D001799 ORTHO05D001655 2.1e-15 85.9 127 35.4
Lj3A893T82 Lonicera japonica HOM05D001799 ORTHO05D001655 2.7e-15 85.5 121 40.5
DCAR_014565 Daucus carota HOM05D001799 ORTHO05D001655 3.6e-15 85.1 123 35.0
MSTRG.26970 Avicennia marina HOM05D001799 ORTHO05D001655 4.7e-15 84.7 122 36.9
COL.COLO4_14379 Corchorus olitorius HOM05D001799 ORTHO05D001655 4.7e-15 84.7 121 38.8
Solyc03g080170.3 Solanum lycopersicum HOM05D001799 ORTHO05D001655 4.7e-15 84.7 121 37.2
Manes.01G043800 Manihot esculenta HOM05D001799 ORTHO05D001655 6.1e-15 84.3 132 35.6
Sopen03g021900 Solanum pennellii HOM05D001799 ORTHO05D001655 8.0e-15 84.0 121 38.8
arahy.Tifrunner.gnm1.ann1.43FH2R Arachis hypogaea HOM05D001799 ORTHO05D001655 1.0e-14 83.6 98 40.8
PGSC0003DMG400000581 Solanum tuberosum HOM05D001799 ORTHO05D001655 1.0e-14 83.6 116 39.7
MD01G1229200 Malus domestica HOM05D001799 ORTHO05D001655 1.4e-14 83.2 118 34.7
QL09p006902 Quercus lobata HOM05D001799 ORTHO05D001655 1.4e-14 83.2 131 38.2
Oeu061036.1 Olea europaea HOM05D001799 ORTHO05D001655 1.8e-14 82.8 123 35.8
SalBow4G2285 Salvia bowleyana HOM05D001799 ORTHO05D001655 1.8e-14 82.8 112 34.8
SalBow4G2945 Salvia bowleyana HOM05D001799 ORTHO05D001655 1.8e-14 82.8 112 34.8
TAR375G0758 Trochodendron aralioides HOM05D001799 ORTHO05D001655 1.8e-14 82.8 130 41.5
Ah.13g070840 Amaranthus hybridus HOM05D001799 ORTHO05D001655 2.3e-14 82.4 102 41.2
CAN.G303.35 Capsicum annuum HOM05D001799 ORTHO05D001655 2.3e-14 82.4 121 36.4
Prupe.2G319800 Prunus persica HOM05D001799 ORTHO05D001655 5.2e-14 81.3 171 29.8
Lsat_1_v5_gn_0_9841 Lactuca sativa HOM05D001799 ORTHO05D001655 6.7e-14 80.9 134 35.1
SGA_v2.0_scaffold18G08472 Striga asiatica HOM05D001799 ORTHO05D001655 8.8e-14 80.5 111 36.0
TPR.G39833 Trifolium pratense HOM05D001799 ORTHO05D001655 8.8e-14 80.5 121 37.2
arahy.Tifrunner.gnm1.ann1.HAI2J2 Arachis hypogaea HOM05D001799 ORTHO05D001655 1.1e-13 80.1 124 33.9
Hund21066 Selenicereus undatus HOM05D001799 ORTHO05D001655 1.5e-13 79.7 134 33.6
Lalb_Chr08g0239541 Lupinus albus HOM05D001799 ORTHO05D001655 2.0e-13 79.3 115 38.3
AUR62005983 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.6e-13 79.0 73 50.7
Glyma.04G227500 Glycine max HOM05D001799 ORTHO05D001655 2.6e-13 79.0 111 39.6
Nn1g09661 Nelumbo nucifera HOM05D001799 ORTHO05D001655 2.6e-13 79.0 128 32.8
Nn8g39146 Nelumbo nucifera HOM05D001799 ORTHO05D001655 2.6e-13 79.0 128 32.8
AUR62028087 Chenopodium quinoa HOM05D001799 ORTHO05D001655 3.3e-13 78.6 73 50.7
AUR62028091 Chenopodium quinoa HOM05D001799 ORTHO05D001655 3.3e-13 78.6 105 38.1
AUR62005980 Chenopodium quinoa HOM05D001799 ORTHO05D001655 5.7e-13 77.8 101 42.6
BcaC06g32668 Brassica carinata HOM05D001799 ORTHO05D001655 7.4e-13 77.4 133 37.6
CANSAT21G2156 Cannabis sativa HOM05D001799 ORTHO05D001655 7.4e-13 77.4 132 34.1
CiPaw.06G040500 Carya illinoinensis HOM05D001799 ORTHO05D001655 7.4e-13 77.4 144 34.7
AUR62028088 Chenopodium quinoa HOM05D001799 ORTHO05D001655 9.7e-13 77.0 84 40.5
DCAR_010570 Daucus carota HOM05D001799 ORTHO05D001655 1.3e-12 76.6 117 37.6
Sc19g0000540 Simmondsia chinensis HOM05D001799 ORTHO05D001655 1.3e-12 76.6 120 36.7
Ca_16785_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 1.7e-12 76.3 125 36.8
Ca_16801_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 1.7e-12 76.3 125 36.8
Atru.chr12.2449 Acer truncatum HOM05D001799 ORTHO05D001655 2.2e-12 75.9 127 36.2
Ah.07g204490 Amaranthus hybridus HOM05D001799 ORTHO05D001655 2.2e-12 75.9 127 36.2
Glyma.04G227600 Glycine max HOM05D001799 ORTHO05D001655 2.8e-12 75.5 117 37.6
Potri.012G006501 Populus trichocarpa HOM05D001799 ORTHO05D001655 2.8e-12 75.5 148 35.1
Atru.chr12.2490 Acer truncatum HOM05D001799 ORTHO05D001655 4.8e-12 74.7 127 35.4
vmacro06449 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 4.8e-12 74.7 131 31.3
arahy.Tifrunner.gnm1.ann1.A9XWZ4 Arachis hypogaea HOM05D001799 ORTHO05D001655 6.3e-12 74.3 125 33.6
Lalb_Chr11g0067451 Lupinus albus HOM05D001799 ORTHO05D001655 8.2e-12 73.9 108 38.0
AUR62005982 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.1e-11 73.6 121 33.1
Atru.chr12.2450 Acer truncatum HOM05D001799 ORTHO05D001655 1.4e-11 73.2 129 35.7
SHI02275 Sapria himalayana HOM05D001799 ORTHO05D001655 1.4e-11 73.2 133 33.8
TPR.G33369 Trifolium pratense HOM05D001799 ORTHO05D001655 1.4e-11 73.2 119 34.5
Rhsim03G0216200 Rhododendron simsii HOM05D001799 ORTHO05D001655 3.1e-11 72.0 120 33.3
Migut.F00143 Erythranthe guttata HOM05D001799 ORTHO05D001655 5.3e-11 71.2 107 35.5
Psat5g071400 Pisum sativum HOM05D001799 ORTHO05D001655 5.3e-11 71.2 116 37.9
Hund21067 Selenicereus undatus HOM05D001799 ORTHO05D001655 7.0e-11 70.9 120 33.3
GSVIVG01038656001 Vitis vinifera HOM05D001799 ORTHO05D001655 7.0e-11 70.9 117 36.8
Cc02_g00750 Coffea canephora HOM05D001799 ORTHO05D001655 9.1e-11 70.5 118 35.6
DCAR_012111 Daucus carota HOM05D001799 ORTHO05D001655 9.1e-11 70.5 125 29.6
Sed0005863 Sechium edule HOM05D001799 ORTHO05D001655 9.1e-11 70.5 127 33.9
Actinidia08702 Actinidia chinensis HOM05D001799 ORTHO05D001655 1.2e-10 70.1 126 34.9
Ah.13g070830 Amaranthus hybridus HOM05D001799 ORTHO05D001655 1.2e-10 70.1 120 32.5
Rhsim09G0210200 Rhododendron simsii HOM05D001799 ORTHO05D001655 1.2e-10 70.1 128 32.8
Gohir.A12G246150 Gossypium hirsutum HOM05D001799 ORTHO05D001655 1.6e-10 69.7 97 38.1
Medtr3g092930 Medicago truncatula HOM05D001799 ORTHO05D001655 1.6e-10 69.7 118 33.1
Sabra15G0002100 Salix brachista HOM05D001799 ORTHO05D001655 2.6e-10 68.9 147 32.0
HanXRQChr04g0111531 Helianthus annuus HOM05D001799 ORTHO05D001655 3.5e-10 68.6 120 35.0
Medtr3g092960 Medicago truncatula HOM05D001799 ORTHO05D001655 3.5e-10 68.6 125 33.6
Sabra12G0008400 Salix brachista HOM05D001799 ORTHO05D001655 3.5e-10 68.6 147 32.0
SGA_v2.0_scaffold44G16852 Striga asiatica HOM05D001799 ORTHO05D001655 3.5e-10 68.6 115 32.2
PGR004G1887 Punica granatum HOM05D001799 ORTHO05D001655 5.9e-10 67.8 114 29.8
Potri.015G003200 Populus trichocarpa HOM05D001799 ORTHO05D001655 1.0e-09 67.0 136 33.8
vmacro10165 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 1.7e-09 66.2 121 33.1
Lj1g0012845 Lotus japonicus HOM05D001799 ORTHO05D001655 3.8e-09 65.1 118 32.2
ECA232G3612 Erigeron canadensis HOM05D000001 ORTHO05D001655 5.0e-09 64.7 122 31.1
Phvul.009G044300 Phaseolus vulgaris HOM05D001799 ORTHO05D001655 5.0e-09 64.7 104 36.5
VMungo1309G1866 Vigna mungo HOM05D001799 ORTHO05D001655 5.0e-09 64.7 102 35.3
Atru.chr1.2423 Acer truncatum HOM05D001799 ORTHO05D001655 6.5e-09 64.3 103 37.9
AUR62028090 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.1e-08 63.5 113 33.6
RcHm_v2.0_Chr1g0382971 Rosa chinensis HOM05D001799 ORTHO05D001655 1.1e-08 63.5 104 35.6
Gohir.D12G246800 Gossypium hirsutum HOM05D001799 ORTHO05D001655 1.9e-08 62.8 99 34.3
Gorai.008G264800 Gossypium raimondii HOM05D001799 ORTHO05D001655 1.9e-08 62.8 99 34.3
PSO210G5694 Papaver somniferum HOM05D001799 ORTHO05D001655 2.5e-08 62.4 125 33.6
PSO210G7307 Papaver somniferum HOM05D001799 ORTHO05D001655 3.2e-08 62.0 125 33.6
Lalb_Chr23g0271961 Lupinus albus HOM05D001799 ORTHO05D001655 4.2e-08 61.6 69 46.4
Atru.chr12.2496 Acer truncatum HOM05D001799 ORTHO05D001655 2.1e-07 59.3 122 30.3
AUR62028089 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.7e-07 58.9 127 32.3
FAN10G2261 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.7e-07 58.9 117 32.5
FAN10G3955 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.7e-07 58.9 117 32.5
EL10Ac3g05162 Beta vulgaris HOM05D001799 ORTHO05D001655 3.6e-07 58.5 133 30.8
EL10Ac3g05163 Beta vulgaris HOM05D001799 ORTHO05D001655 3.6e-07 58.5 167 25.7
Atru.chr12.2492 Acer truncatum HOM05D001799 ORTHO05D001655 4.7e-07 58.2 115 32.2
FvH4_7g33000 Fragaria vesca HOM05D001799 ORTHO05D001655 4.7e-07 58.2 124 32.3
BcaB01g04277 Brassica carinata HOM05D001799 ORTHO05D001655 1.0e-06 57.0 51 51.0
vmacro06448 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 1.0e-06 57.0 126 31.0
BcaB01g04278 Brassica carinata HOM05D001799 ORTHO05D001655 1.8e-06 56.2 29 75.9
Thhalv10016024m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 2.3e-06 55.8 33 69.7
FAN01G2762 Fragaria x ananassa HOM05D001799 ORTHO05D001655 3.0e-06 55.5 115 32.2
EL10Ac3g05161 Beta vulgaris HOM05D001799 ORTHO05D001655 4.0e-06 55.1 56 41.1
FAN03G0617 Fragaria x ananassa HOM05D001799 ORTHO05D001655 5.2e-06 54.7 112 32.1
MBI04_g22926_MAGBIO Magnolia biondii HOM05D001799 ORTHO05D001655 5.2e-06 54.7 112 33.0
unitig_0.g2441 Utricularia gibba HOM05D001799 ORTHO05D001655 5.2e-06 54.7 110 30.0


User provided reference genes

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