Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G29040 Arabidopsis lyrata HOM05D012500 ORTHO05D009211 2.8e-206 722.2 529 100.0
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 2.6e-159 566.2 400 84.2
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 1.8e-144 516.9 402 76.6
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 1.0e-107 394.8 413 64.2
Thhalv10013275m.g Eutrema salsugineum HOM05D012500 ORTHO05D009211 7.4e-106 388.7 408 62.7
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 6.3e-89 332.4 408 56.1
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 1.1e-88 331.6 411 56.0
CARHR267070 Cardamine hirsuta HOM05D012500 ORTHO05D009211 2.0e-87 327.4 383 60.3
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 4.5e-87 326.2 404 56.2
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 8.0e-84 315.5 408 54.9
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 3.0e-83 313.5 408 54.9
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 6.7e-83 312.4 406 57.1
Aa31LG3G10020 Aethionema arabicum HOM05D012500 ORTHO05D009211 1.8e-59 234.6 407 45.5
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 5.4e-40 169.9 305 40.7
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 8.1e-12 76.3 484 28.9
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.1e-11 75.9 285 29.1
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 1.4e-11 75.5 300 28.7
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 4.0e-11 73.9 383 29.0
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 5.3e-11 73.6 439 27.6
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 6.9e-11 73.2 282 28.4
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.5e-10 72.0 291 28.9
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.4e-10 70.9 299 30.8
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 4.5e-10 70.5 334 29.0
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 5.8e-10 70.1 472 27.8
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.2e-09 68.2 427 25.1
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 2.9e-09 67.8 410 26.6
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 3.8e-09 67.4 398 28.6
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 4.9e-09 67.0 485 25.4
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.1e-08 65.9 465 27.1
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 1.1e-08 65.9 382 26.7
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 2.4e-08 64.7 461 26.7
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 3.2e-08 64.3 485 24.9
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 4.2e-08 63.9 526 26.2
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 5.4e-08 63.5 451 26.4
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 7.1e-08 63.2 467 28.1
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 9.3e-08 62.8 438 24.9
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 1.6e-07 62.0 69 52.2
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 2.1e-07 61.6 463 26.6
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 2.7e-07 61.2 411 28.0
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.5e-07 60.8 453 26.0
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 3.5e-07 60.8 432 24.8
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 3.5e-07 60.8 453 26.9
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 4.6e-07 60.5 520 26.2
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 6.0e-07 60.1 315 30.8
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 7.9e-07 59.7 180 33.9
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 7.9e-07 59.7 95 42.1
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 1.3e-06 58.9 400 28.0
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 2.3e-06 58.2 346 26.0
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 3.9e-06 57.4 74 44.6
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 3.9e-06 57.4 473 27.3
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 5.1e-06 57.0 69 53.6
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 6.7e-06 56.6 440 26.6
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 8.7e-06 56.2 293 26.6


User provided reference genes

Program Settings