Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 1.0e-251 872.8 423 100.0
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 1.8e-248 862.1 423 98.3
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 9.7e-242 839.7 423 95.7
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 1.3e-241 839.3 423 94.8
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 2.4e-240 835.1 423 95.0
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 6.9e-240 833.6 423 95.0
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 9.1e-240 833.2 423 94.8
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 9.1e-240 833.2 423 94.1
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 4.5e-239 830.9 423 94.3
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 1.7e-238 828.9 423 94.6
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 1.0e-222 776.5 402 92.5
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 7.2e-221 770.4 434 87.3
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 8.8e-219 763.5 468 82.1
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 4.1e-216 754.6 423 85.6
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 1.2e-210 736.5 423 80.6
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 4.1e-208 728.0 423 79.4
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 2.0e-207 725.7 423 79.2
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 1.7e-206 722.6 423 79.0
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 7.3e-205 717.2 423 78.3
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 1.6e-204 716.1 423 78.7
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 6.1e-204 714.1 423 78.7
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 9.8e-202 706.8 424 77.1
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 3.7e-201 704.9 426 76.3
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 1.8e-200 702.6 427 76.8
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 2.4e-200 702.2 425 75.1
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 4.1e-200 701.4 409 79.0
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 7.0e-200 700.7 424 75.7
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 2.0e-199 699.1 423 75.9
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 3.5e-199 698.4 423 74.9
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 3.5e-199 698.4 421 76.2
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 4.6e-199 698.0 412 78.9
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 1.7e-198 696.0 422 75.6
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 3.0e-198 695.3 425 74.8
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 3.9e-198 694.9 425 74.6
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 6.6e-198 694.1 420 75.2
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 6.6e-198 694.1 417 76.0
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 5.6e-197 691.0 412 76.2
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 9.5e-197 690.3 423 75.7
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 2.1e-196 689.1 420 75.2
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 1.8e-195 686.0 417 75.5
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 1.8e-195 686.0 424 72.9
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 6.8e-195 684.1 423 74.0
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 1.2e-194 683.3 416 76.4
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 1.2e-194 683.3 423 74.2
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 5.8e-194 681.0 410 76.1
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 5.8e-194 681.0 417 76.7
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 7.5e-194 680.6 407 76.4
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 3.7e-193 678.3 417 76.3
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 4.9e-193 677.9 417 73.1
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 8.3e-193 677.2 421 75.3
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 1.4e-192 676.4 424 71.9
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 1.4e-192 676.4 424 71.7
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 1.9e-192 676.0 423 74.0
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 2.7e-191 672.2 423 74.2
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 6.0e-191 671.0 424 72.4
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 3.0e-190 668.7 417 73.4
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 1.1e-189 666.8 425 71.3
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 2.5e-189 665.6 423 73.8
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 4.3e-189 664.8 425 70.1
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 7.3e-189 664.1 450 70.0
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 1.6e-188 662.9 417 72.7
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 8.1e-188 660.6 411 74.7
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 1.8e-187 659.4 423 70.7
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 6.8e-187 657.5 423 72.6
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 3.4e-186 655.2 412 71.8
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 7.5e-186 654.1 426 71.8
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 2.9e-185 652.1 424 69.6
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 4.9e-185 651.4 403 73.2
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 8.3e-185 650.6 424 72.9
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 4.6e-183 644.8 425 70.8
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 1.3e-182 643.3 407 71.3
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 3.9e-182 641.7 417 72.7
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 4.3e-181 638.3 387 73.9
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 1.6e-180 636.3 417 71.0
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 8.1e-180 634.0 425 70.1
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 1.8e-179 632.9 540 59.3
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 2.0e-178 629.4 423 67.8
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 1.7e-177 626.3 418 68.9
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 9.2e-176 620.5 422 66.8
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 1.1e-173 613.6 411 70.6
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 5.2e-171 604.7 419 69.0
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 1.2e-170 603.6 409 68.7
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 3.5e-167 592.0 414 67.9
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 7.8e-167 590.9 453 63.4
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 5.1e-166 588.2 422 64.0
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 1.1e-157 560.5 413 66.3
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 3.7e-156 555.4 401 66.1
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 2.4e-152 542.7 414 61.8
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 5.1e-150 535.0 364 69.0
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 8.2e-148 527.7 371 66.8
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 1.9e-144 516.5 312 75.6
Cpa.g.sc80.77 Carica papaya HOM05D006845 ORTHO05D009300 7.4e-141 504.6 423 60.3
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 7.4e-141 504.6 380 65.0
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 6.3e-140 501.5 313 72.5
BcaB07g33336 Brassica carinata HOM05D006845 ORTHO05D009300 1.3e-108 397.5 204 92.2
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 7.5e-93 345.1 214 71.5
SEGI_13558 Sequoiadendron giganteum HOM05D006845 ORTHO05D009300 2.8e-92 343.2 346 44.2
Pp3c1_32740 Physcomitrium patens HOM05D006845 ORTHO05D009300 2.8e-87 326.6 346 45.1
Cc05_g11920 Coffea canephora HOM05D006845 ORTHO05D009300 2.6e-85 320.1 204 73.0
AagrBONN_evm.TU.Sc2ySwM_344.572 Anthoceros agrestis HOM05D006845 ORTHO05D009300 1.7e-84 317.4 376 41.5
Mapoly0037s0133 Marchantia polymorpha HOM05D006845 ORTHO05D009300 1.3e-73 281.2 347 38.3
SMO143G0137 Selaginella moellendorffii HOM05D006845 ORTHO05D009300 1.5e-64 251.1 280 43.9
unitig_899.g15568 Utricularia gibba HOM05D006845 ORTHO05D009300 1.7e-44 184.5 106 77.4
BcaB04g16942 Brassica carinata HOM05D006845 ORTHO05D009300 3.4e-37 160.2 139 64.7
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 1.7e-36 157.9 85 83.5
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 4.9e-36 156.4 103 66.0
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 4.6e-34 149.8 106 63.2
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 4.6e-34 149.8 106 63.2
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 1.8e-33 147.9 103 63.1
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 5.5e-11 73.2 49 65.3
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 3.6e-10 70.5 49 63.3
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 4.7e-10 70.1 50 62.0
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 3.0e-09 67.4 47 63.8
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 2.8e-07 60.8 48 56.2
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 4.8e-07 60.1 45 60.0


User provided reference genes

Program Settings