Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 0.0e+00 1354.0 674 100.0
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 0.0e+00 1234.9 674 91.5
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 0.0e+00 1223.0 676 90.8
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 0.0e+00 1223.0 676 90.5
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 0.0e+00 1217.6 676 90.5
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 0.0e+00 1174.5 669 89.1
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 0.0e+00 1171.0 670 88.5
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 0.0e+00 1131.3 645 88.7
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 0.0e+00 1127.5 646 88.2
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 0.0e+00 1109.0 669 82.8
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 0.0e+00 1105.9 678 84.8
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 4.6e-312 1073.5 677 79.8
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 3.5e-254 881.7 673 67.2
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 4.6e-254 881.3 678 67.0
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 2.3e-253 879.0 673 66.9
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 2.3e-253 879.0 676 66.4
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 5.1e-253 877.9 629 70.7
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 6.7e-253 877.5 682 66.4
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 9.7e-252 873.6 673 67.0
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 4.8e-251 871.3 655 68.5
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.4e-250 869.0 589 74.0
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 9.0e-250 867.1 679 66.1
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 2.0e-249 865.9 459 94.3
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 2.0e-249 865.9 684 65.6
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 2.6e-249 865.5 624 70.2
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 3.4e-249 865.1 673 66.4
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 5.9e-249 864.4 674 65.7
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.1e-247 860.1 674 65.9
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 1.9e-247 859.4 676 66.0
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 2.5e-247 859.0 674 65.7
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 4.2e-247 858.2 621 69.9
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 5.5e-247 857.8 674 66.0
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 9.3e-247 857.1 675 65.9
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 9.3e-247 857.1 676 64.3
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.2e-246 856.7 674 65.3
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 3.6e-246 855.1 621 69.7
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 3.6e-246 855.1 690 64.1
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 4.6e-246 854.7 675 65.2
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 1.8e-245 852.8 682 64.2
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 2.3e-245 852.4 624 68.4
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 2.3e-245 852.4 629 68.7
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 3.9e-245 851.7 629 68.8
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 5.1e-245 851.3 682 65.1
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 6.7e-245 850.9 673 65.1
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 8.8e-245 850.5 612 69.1
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 1.1e-244 850.1 701 63.8
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 3.3e-244 848.6 628 68.2
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 4.3e-244 848.2 631 68.1
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 1.3e-243 846.7 679 64.8
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 1.3e-243 846.7 671 64.1
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 6.3e-243 844.3 677 65.7
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 2.0e-241 839.3 680 64.0
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 3.4e-241 838.6 692 64.5
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 7.7e-241 837.4 595 69.2
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 2.2e-240 835.9 685 64.2
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 2.2e-240 835.9 678 63.9
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 2.9e-240 835.5 678 63.9
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 3.8e-240 835.1 589 70.5
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 1.4e-239 833.2 678 63.7
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 1.4e-237 826.6 578 71.8
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 2.3e-237 825.9 610 67.5
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 2.4e-234 815.8 629 65.7
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 1.0e-232 810.4 629 65.0
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.3e-232 810.1 673 61.2
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 5.0e-232 808.1 670 61.9
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 6.5e-232 807.7 678 62.2
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 8.5e-232 807.4 677 61.6
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 2.5e-231 805.8 674 61.9
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 2.7e-230 802.4 674 61.4
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 4.7e-230 801.6 669 60.7
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 2.3e-229 799.3 674 61.1
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 5.2e-229 798.1 640 65.2
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 3.3e-228 795.4 671 61.4
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 4.4e-228 795.0 672 62.2
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 1.3e-227 793.5 683 60.2
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 5.3e-226 788.1 658 62.3
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 2.6e-225 785.8 627 63.8
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 2.2e-224 782.7 676 60.9
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 1.9e-223 779.6 666 60.5
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 4.7e-222 775.0 678 60.2
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 9.7e-220 767.3 582 65.8
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 1.4e-218 763.5 652 61.5
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 4.1e-218 761.9 584 68.8
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 8.0e-214 747.7 652 60.9
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 1.2e-212 743.8 611 62.0
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 3.1e-210 735.7 590 62.4
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 2.0e-209 733.0 587 62.2
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 5.7e-204 714.9 675 57.5
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 1.3e-203 713.8 542 67.5
Lsat_1_v5_gn_5_75160 Lactuca sativa HOM05D006590 ORTHO05D008427 1.3e-203 713.8 655 59.4
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 2.2e-203 713.0 589 59.3
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 3.7e-203 712.2 629 59.3
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 8.3e-195 684.5 653 56.8
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 3.6e-190 669.1 599 59.1
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 6.2e-190 668.3 534 63.5
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 1.5e-188 663.7 463 71.7
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 1.1e-186 657.5 680 54.3
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 2.5e-159 566.6 595 51.4
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 2.4e-157 560.1 401 70.3
Mapoly0022s0163 Marchantia polymorpha HOM05D006590 ORTHO05D008427 2.6e-156 556.6 621 47.7
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 3.8e-155 552.7 673 48.3
SMO172G0068 Selaginella moellendorffii HOM05D006590 ORTHO05D008427 2.8e-150 536.6 604 49.0
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 2.9e-139 500.0 353 66.9
SalBow4G1387 Salvia bowleyana HOM05D006590 ORTHO05D008427 1.8e-125 454.1 363 61.4
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 2.6e-95 354.0 234 77.4
CBR_g39728 Chara braunii HOM05D006590 ORTHO05D008427 1.1e-90 338.6 634 35.0
Potri.015G016500 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.9e-74 284.6 234 62.4
Actinidia33527 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.0e-67 262.3 347 46.7
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 3.3e-58 230.7 124 89.5
Potri.015G016600 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.8e-54 217.2 159 69.8
Sabra15G0012800 Salix brachista HOM05D006590 ORTHO05D008427 5.8e-47 193.4 150 64.7
Potri.015G016300 Populus trichocarpa HOM05D006590 ORTHO05D008427 4.3e-42 177.2 134 67.2
Potri.015G016375 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.6e-39 167.9 144 62.5
Hund04856 Selenicereus undatus HOM05D006590 ORTHO05D008427 2.1e-28 131.7 200 42.5
Actinidia34212 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.6e-25 122.1 78 73.1
COL.COLO4_02893 Corchorus olitorius HOM05D006590 ORTHO05D008427 2.4e-24 118.2 60 91.7
CDE10G1176 Ceratophyllum demersum HOM05D006590 ORTHO05D008427 1.6e-17 95.5 58 72.4
Hma1.2p1_0404F.1_g145520 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 5.5e-13 80.5 50 76.0
Lsat_1_v5_gn_2_64600 Lactuca sativa HOM05D006590 ORTHO05D011991 3.9e-11 74.3 96 42.7
Lj6A727T95 Lonicera japonica HOM05D000084 ORTHO05D000639 8.2e-09 66.6 200 28.5
Pp3c4_25980 Physcomitrium patens HOM05D002406 ORTHO05D007964 8.2e-09 66.6 291 24.1
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 2.4e-08 65.1 56 57.1
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 5.3e-08 63.9 291 23.4
unitig_52.g17148 Utricularia gibba HOM05D002406 ORTHO05D007964 6.9e-08 63.5 347 21.9
Sabra08G0088500 Salix brachista HOM05D002406 ORTHO05D007964 1.2e-07 62.8 298 20.8
Aqoxy2G01300 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.5e-07 62.4 38 65.8
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 1.5e-07 62.4 331 20.2
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 1.5e-07 62.4 319 22.6
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 2.0e-07 62.0 319 21.6
Nitab4.5_0000597g0020 Nicotiana tabacum HOM05D002406 ORTHO05D007964 2.0e-07 62.0 291 21.6
Sed0011685 Sechium edule HOM05D002406 ORTHO05D007964 2.0e-07 62.0 295 20.0
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 2.0e-07 62.0 290 21.4
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 2.6e-07 61.6 291 20.6
Migut.K01266 Erythranthe guttata HOM05D002406 ORTHO05D007964 2.6e-07 61.6 290 20.7
PSO782G1356 Papaver somniferum HOM05D002406 ORTHO05D007964 2.6e-07 61.6 350 21.7
CAN.G430.6 Capsicum annuum HOM05D002406 ORTHO05D007964 3.4e-07 61.2 291 21.3
CsaV3_5G025330 Cucumis sativus L. HOM05D002406 ORTHO05D007964 3.4e-07 61.2 290 19.7
Nitab4.5_0009248g0010 Nicotiana tabacum HOM05D002406 ORTHO05D007964 4.5e-07 60.8 300 21.0
PSO063G1488 Papaver somniferum HOM05D002406 ORTHO05D007964 4.5e-07 60.8 350 21.7
Potri.008G116800 Populus trichocarpa HOM05D002406 ORTHO05D007964 4.5e-07 60.8 290 20.0
DCAR_026716 Daucus carota HOM05D002406 ORTHO05D007964 5.9e-07 60.5 287 22.3
FAN07G2527 Fragaria x ananassa HOM05D002406 ORTHO05D007964 7.7e-07 60.1 290 21.4
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 7.7e-07 60.1 290 21.4
Ah.03g137950 Amaranthus hybridus HOM05D002406 ORTHO05D007964 1.0e-06 59.7 291 20.6
Nn3g17743 Nelumbo nucifera HOM05D002406 ORTHO05D007964 1.0e-06 59.7 206 23.8
RcHm_v2.0_Chr4g0435821 Rosa chinensis HOM05D002406 ORTHO05D007964 1.0e-06 59.7 290 21.4
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 1.0e-06 59.7 291 22.0
CBR_g8256 Chara braunii HOM05D002406 ORTHO05D007964 1.3e-06 59.3 274 23.4
Cc11_g10600 Coffea canephora HOM05D002406 ORTHO05D007964 1.3e-06 59.3 290 20.3
CiPaw.15G003700 Carya illinoinensis HOM05D002406 ORTHO05D007964 1.7e-06 58.9 291 22.3
FvH4_4g28080 Fragaria vesca HOM05D002406 ORTHO05D007964 1.7e-06 58.9 290 22.1
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 1.7e-06 58.9 290 20.3
Glyma.02G100000 Glycine max HOM05D002406 ORTHO05D007964 2.9e-06 58.2 291 23.4
Lj3A1020T56 Lonicera japonica HOM05D002406 ORTHO05D007964 2.9e-06 58.2 291 20.6
Nn4g23734 Nelumbo nucifera HOM05D002406 ORTHO05D007964 2.9e-06 58.2 291 20.6
ATR0681G159 Amborella trichopoda HOM05D002406 ORTHO05D007964 5.0e-06 57.4 291 19.9
AL2G27800 Arabidopsis lyrata HOM05D002406 ORTHO05D007964 5.0e-06 57.4 295 22.0
arahy.Tifrunner.gnm1.ann1.HY6M5B Arachis hypogaea HOM05D002406 ORTHO05D007964 5.0e-06 57.4 321 22.4
arahy.Tifrunner.gnm1.ann1.Z89BXU Arachis hypogaea HOM05D002406 ORTHO05D007964 5.0e-06 57.4 321 22.4
Manes.14G097700 Manihot esculenta HOM05D002406 ORTHO05D007964 5.0e-06 57.4 295 20.7
Actinidia03834 Actinidia chinensis HOM05D000084 ORTHO05D000639 6.5e-06 57.0 197 26.9
AagrBONN_evm.TU.Sc2ySwM_117.16 Anthoceros agrestis HOM05D002406 ORTHO05D007964 6.5e-06 57.0 260 19.6
Cpa.g.sc1.223 Carica papaya HOM05D002406 ORTHO05D007964 6.5e-06 57.0 291 20.3
Mapoly0009s0197 Marchantia polymorpha HOM05D002406 ORTHO05D007964 6.5e-06 57.0 291 22.7
Peaxi162Scf00004g00138 Petunia axillaris HOM05D002406 ORTHO05D007964 6.5e-06 57.0 291 21.3
TWI31G1069 Tripterygium wilfordii HOM05D002406 ORTHO05D007964 6.5e-06 57.0 205 22.4
Eucgr.G02347 Eucalyptus grandis HOM05D002406 ORTHO05D007964 8.5e-06 56.6 290 23.1


User provided reference genes

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