Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.3e-114 415.6 214 100.0
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.7e-107 392.1 214 95.3
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.3e-106 389.8 214 94.4
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.3e-105 384.8 214 93.0
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 7.6e-102 374.0 214 91.1
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 1.5e-97 359.8 208 90.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.8e-95 352.8 214 85.5
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.8e-95 352.8 214 85.5
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.8e-95 352.8 214 85.5
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 5.9e-94 347.8 215 86.0
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-93 347.1 214 84.6
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 1.0e-93 347.1 214 84.6
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.6e-91 338.2 215 83.3
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.8e-77 292.0 177 83.1
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.9e-76 289.7 200 76.5
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.0e-74 283.9 218 70.6
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.6e-70 269.2 227 63.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.9e-70 268.1 226 64.2
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 7.7e-70 267.7 225 64.4
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 6.5e-69 264.6 206 68.9
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 8.5e-69 264.2 222 63.5
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 8.5e-69 264.2 225 64.0
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 2.5e-68 262.7 222 64.0
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 3.2e-68 262.3 215 65.1
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 9.4e-68 260.8 225 61.8
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.6e-67 260.0 230 60.4
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 2.1e-67 259.6 224 64.3
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 6.1e-67 258.1 220 61.4
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 6.1e-67 258.1 232 60.8
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 6.1e-67 258.1 177 75.1
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.0e-66 257.3 220 62.7
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.8e-66 256.5 229 62.9
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 4.0e-66 255.4 177 70.6
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 6.7e-66 254.6 189 68.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.5e-65 253.4 215 65.1
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.6e-65 252.7 177 71.2
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.3e-65 252.3 212 63.7
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 4.4e-65 251.9 228 62.7
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 5.7e-65 251.5 219 66.2
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 9.7e-65 250.8 212 63.2
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 9.7e-65 250.8 221 63.8
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.3e-64 250.4 213 64.3
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.7e-64 250.0 177 71.8
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.7e-64 250.0 226 58.8
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.2e-64 249.6 223 61.4
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.2e-64 249.6 212 62.7
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 3.7e-64 248.8 219 65.3
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 6.3e-64 248.1 227 60.4
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 8.2e-64 247.7 220 60.5
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 8.2e-64 247.7 225 60.9
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 1.1e-63 247.3 177 69.5
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.4e-63 246.9 176 68.8
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.4e-63 246.1 176 67.6
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.4e-63 246.1 225 60.9
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 2.4e-63 246.1 177 68.9
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 3.1e-63 245.7 223 60.5
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 4.1e-63 245.4 171 72.5
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 5.3e-63 245.0 204 63.2
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 7.0e-63 244.6 223 58.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 7.0e-63 244.6 220 60.9
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 9.1e-63 244.2 177 67.8
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 9.1e-63 244.2 176 67.0
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-62 243.8 223 61.0
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-62 243.8 223 61.0
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.6e-62 243.4 214 62.1
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.0e-62 243.0 220 61.8
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.7e-62 242.7 202 62.9
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.7e-62 242.7 223 60.5
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 3.5e-62 242.3 225 59.6
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 3.5e-62 242.3 209 62.7
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 4.5e-62 241.9 225 58.2
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.3e-61 240.4 223 60.1
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.3e-61 240.4 214 59.8
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.3e-61 240.4 227 60.4
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 6.5e-61 238.0 209 66.0
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 8.5e-61 237.7 235 56.6
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 8.5e-61 237.7 221 58.4
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 8.5e-61 237.7 210 61.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 1.5e-60 236.9 208 61.5
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.5e-60 236.9 228 59.6
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.5e-60 236.9 207 62.3
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 2.5e-60 236.1 229 57.2
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 4.2e-60 235.3 201 63.2
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 9.4e-60 234.2 217 60.4
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.1e-59 233.0 206 59.7
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.7e-59 232.6 212 59.4
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.6e-59 232.3 204 59.3
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.0e-58 230.7 204 58.3
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.4e-58 230.3 203 59.6
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 3.0e-58 229.2 177 62.1
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 8.8e-58 227.6 209 58.9
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.7e-56 223.4 171 62.6
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 8.3e-56 221.1 223 56.5
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.8e-55 219.9 176 59.1
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 3.1e-55 219.2 154 67.5
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.1e-55 218.8 164 65.2
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 4.1e-55 218.8 164 65.2
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 9.1e-55 217.6 195 62.6
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-54 216.9 223 56.5
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.5e-54 215.7 213 54.5
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 5.9e-54 214.9 195 62.6
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 7.7e-54 214.5 201 56.7
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.0e-53 214.2 214 57.0
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 1.3e-53 213.8 196 57.1
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.3e-53 213.8 182 63.7
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 2.9e-53 212.6 217 51.2
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.8e-53 212.2 205 57.6
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 3.8e-53 212.2 155 64.5
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 8.5e-53 211.1 195 56.9
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.9e-52 209.9 219 54.8
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.9e-52 209.9 219 54.8
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.5e-52 209.5 147 69.4
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 5.5e-52 208.4 155 63.9
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.1e-51 206.5 147 69.4
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 2.1e-51 206.5 155 63.9
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 3.6e-51 205.7 176 55.7
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.8e-50 203.4 156 62.2
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.3e-50 203.0 155 65.2
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 1.2e-49 200.7 188 55.9
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 1.2e-49 200.7 157 62.4
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 3.4e-49 199.1 172 59.9
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 4.4e-49 198.7 156 63.5
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 5.7e-49 198.4 155 63.2
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 9.8e-49 197.6 194 53.6
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 2.8e-48 196.1 145 63.4
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.4e-47 193.7 171 57.3
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.8e-47 193.4 188 52.1
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.4e-47 193.0 128 73.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 4.1e-47 192.2 142 66.2
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.2e-46 190.7 153 60.8
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.0e-46 189.9 137 66.4
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.7e-45 186.8 136 66.9
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.7e-43 178.7 144 64.6
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.6e-41 172.9 118 71.2
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 3.2e-39 166.0 179 46.4
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.2e-38 164.1 94 88.3
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 2.7e-38 162.9 163 54.6
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 2.7e-38 162.9 163 54.6
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.0e-37 158.7 106 71.7
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.1e-36 157.5 137 55.5
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 1.5e-36 157.1 198 43.4
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.5e-36 157.1 106 70.8
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.5e-36 157.1 166 45.8
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.8e-35 152.9 179 45.3
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 4.9e-32 142.1 108 64.8
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.6e-30 135.6 155 40.6
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.1e-19 100.1 157 40.1
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 2.4e-15 86.7 192 30.7


User provided reference genes

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