Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 3.6e-149 531.6 273 100.0
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 9.6e-142 506.9 273 95.6
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 3.8e-130 468.4 276 89.5
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 2.7e-128 462.2 273 88.3
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 3.7e-125 451.8 275 86.5
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 6.3e-125 451.1 274 87.2
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 1.4e-111 406.8 275 80.0
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 2.1e-104 382.9 274 75.5
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 5.2e-103 378.3 274 76.6
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 5.2e-103 378.3 274 76.6
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 5.2e-103 378.3 274 76.6
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.4e-100 370.2 274 75.9
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 7.0e-100 367.9 274 75.5
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.6e-99 366.7 272 72.1
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 5.5e-97 358.2 276 74.6
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 7.2e-97 357.8 276 74.6
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 3.6e-96 355.5 280 72.9
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 4.0e-95 352.1 274 73.7
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 5.2e-95 351.7 282 72.0
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 3.8e-90 335.5 240 77.5
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.4e-79 300.4 273 59.7
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 1.8e-79 300.1 272 58.5
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 2.4e-76 289.7 271 57.6
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 2.4e-76 289.7 283 56.9
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 3.2e-76 289.3 272 57.7
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 2.9e-74 282.7 285 56.8
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 6.6e-74 281.6 272 58.5
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.5e-73 280.4 146 97.3
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 1.5e-73 280.4 274 57.7
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 2.5e-73 279.6 278 57.2
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 4.3e-73 278.9 286 56.6
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 2.8e-72 276.2 274 56.2
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 3.6e-72 275.8 282 54.6
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 4.7e-72 275.4 285 56.1
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.0e-72 274.6 274 56.2
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.0e-72 274.6 274 55.8
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.4e-71 273.9 284 55.3
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 1.5e-70 270.4 279 55.6
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 8.3e-69 264.6 282 55.3
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.1e-68 264.2 276 56.2
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 1.4e-68 263.8 289 54.3
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 1.4e-68 263.8 276 54.3
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.9e-68 263.5 272 57.0
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 5.4e-68 261.9 298 53.4
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 1.2e-67 260.8 272 55.5
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 2.0e-67 260.0 272 52.2
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 3.5e-67 259.2 283 53.0
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.3e-66 257.3 288 53.5
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.3e-66 257.3 288 53.5
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 1.7e-66 256.9 272 53.7
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.7e-66 256.9 276 54.7
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 2.3e-66 256.5 274 55.1
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 5.0e-66 255.4 283 53.4
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 8.6e-66 254.6 279 53.0
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 8.6e-66 254.6 281 54.8
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.1e-65 254.2 277 55.2
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.1e-65 254.2 288 51.0
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.1e-65 254.2 350 45.4
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.9e-65 253.4 279 52.7
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 5.6e-65 251.9 292 50.7
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 5.6e-65 251.9 292 51.0
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 7.3e-65 251.5 284 52.8
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 9.5e-65 251.1 276 53.3
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.6e-64 250.4 276 52.5
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 2.1e-64 250.0 277 51.6
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.6e-64 249.2 294 50.7
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 3.6e-64 249.2 279 51.6
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 3.6e-64 249.2 274 52.9
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 4.7e-64 248.8 276 54.3
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 8.0e-64 248.1 277 53.8
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 1.1e-63 247.7 284 50.7
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 1.4e-63 247.3 277 50.5
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 1.8e-63 246.9 281 51.6
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 3.1e-63 246.1 288 50.7
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 4.0e-63 245.7 273 52.4
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 6.8e-63 245.0 297 51.5
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 6.8e-63 245.0 279 50.9
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 1.2e-62 244.2 278 53.6
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.2e-62 244.2 304 49.3
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.5e-62 243.8 276 54.0
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.4e-62 242.7 319 47.3
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 5.8e-62 241.9 283 50.5
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 5.8e-62 241.9 280 50.7
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 5.8e-62 241.9 279 50.5
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 7.5e-62 241.5 278 50.0
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 7.5e-62 241.5 282 51.8
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 1.3e-61 240.7 280 50.0
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 1.7e-61 240.4 276 50.4
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 2.9e-61 239.6 227 58.6
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 3.2e-60 236.1 284 50.0
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 5.4e-60 235.3 323 46.4
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 7.1e-60 235.0 299 47.8
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 2.1e-59 233.4 285 49.5
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 4.6e-59 232.3 285 49.1
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 3.9e-58 229.2 279 51.3
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 8.6e-58 228.0 281 48.8
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 3.3e-57 226.1 272 50.4
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 7.3e-57 224.9 344 43.3
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 2.1e-56 223.4 291 47.8
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 3.6e-56 222.6 272 49.6
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 1.8e-55 220.3 285 47.7
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.8e-55 220.3 271 50.2
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 2.3e-55 219.9 274 50.7
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 4.0e-55 219.2 292 45.2
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 2.6e-54 216.5 289 47.1
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 3.4e-54 216.1 282 46.5
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.8e-54 215.3 271 49.4
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.7e-53 213.8 283 47.0
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 6.4e-53 211.8 280 50.4
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.4e-52 209.9 273 47.3
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 3.2e-52 209.5 284 46.1
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 4.1e-52 209.1 271 45.8
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 7.1e-52 208.4 277 45.5
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.2e-51 207.6 276 47.8
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 4.3e-49 199.1 275 45.8
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 4.3e-49 199.1 180 59.4
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 1.2e-46 191.0 296 43.6
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.7e-45 187.2 480 33.1
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.9e-45 185.7 177 56.5
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 6.6e-42 175.3 511 31.1
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 9.6e-41 171.4 270 44.4
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 5.3e-39 165.6 116 69.8
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 9.0e-39 164.9 282 40.1
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.5e-38 164.1 136 63.2
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 5.8e-38 162.2 136 62.5
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 8.4e-37 158.3 144 60.4
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 6.0e-35 152.1 252 39.3
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 3.9e-34 149.4 272 37.5
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.1e-33 147.9 214 46.7
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.1e-31 141.4 177 48.6
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.5e-30 137.5 275 37.5
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 2.2e-29 133.7 99 68.7
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 1.9e-28 130.6 284 37.3
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 5.4e-28 129.0 175 42.9
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 5.4e-28 129.0 175 42.9
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 2.1e-27 127.1 176 43.8
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 6.7e-26 122.1 272 33.1
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 2.5e-25 120.2 274 33.6
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 2.0e-22 110.5 290 32.8
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 7.6e-22 108.6 106 57.5
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 2.2e-21 107.1 107 54.2
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 1.9e-20 104.0 173 42.8
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.4e-15 87.0 164 37.2
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.9e-13 80.1 154 38.3
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-12 76.6 146 36.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-12 76.6 150 37.3
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 9.3e-12 75.1 162 36.4
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 6.1e-11 72.4 156 34.0
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 6.1e-11 72.4 160 33.1
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 6.1e-11 72.4 158 33.5
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.1e-10 69.3 165 33.3
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 8.7e-10 68.6 77 51.9
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 8.7e-10 68.6 77 51.9
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-09 67.8 173 31.2
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.9e-09 67.4 194 29.9
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.6e-08 64.3 158 33.5
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.8e-08 63.5 151 33.8
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.8e-08 63.5 114 37.7
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.8e-08 63.5 75 40.0
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 3.7e-08 63.2 175 32.0
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 4.8e-08 62.8 100 40.0
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 8.2e-08 62.0 227 28.6
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 8.2e-08 62.0 80 38.8
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.1e-07 61.6 146 31.5
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 1.1e-07 61.6 85 47.1
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.4e-07 61.2 229 28.4
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 3.1e-07 60.1 89 39.3
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.1e-07 59.7 167 29.9
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 9.0e-07 58.5 78 41.0
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.2e-06 58.2 151 31.1
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.2e-06 58.2 166 25.3
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 2.6e-06 57.0 150 32.7
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.4e-06 56.6 166 25.3
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 5.9e-06 55.8 76 39.5
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 5.9e-06 55.8 157 29.3
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 5.9e-06 55.8 253 23.7
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 7.7e-06 55.5 167 29.3
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.0e-05 55.1 78 39.7
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.0e-05 55.1 202 29.2
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.0e-05 55.1 71 40.8


User provided reference genes

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