Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27750 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 7.6e-106 387.1 188 100.0
AT5G53700 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 2.8e-55 219.2 198 59.1
Carub.0008s1399 Capsella rubella HOM05D005207 ORTHO05D012773 6.6e-49 198.0 182 55.5
AL8G28020 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.0e-41 171.8 190 53.7
AL3G11550 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.0e-30 135.6 180 46.1
AL6G12910 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 6.4e-28 128.3 188 42.6
AL1G48230 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.1e-27 127.5 198 42.9
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 1.9e-27 126.7 152 48.7
AL6G12880 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 6.0e-26 121.7 185 42.2
AT5G03495 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 6.0e-26 121.7 161 44.7
AL3G38420 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.7e-25 120.2 185 41.1
AL6G12890 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 6.6e-25 118.2 159 42.8
AL1G25630 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.1e-24 117.5 168 42.3
Carub.0008s1419 Capsella rubella HOM05D005207 ORTHO05D114602 4.3e-24 115.5 182 43.4
Carub.0006s0230 Capsella rubella HOM05D005207 ORTHO05D012773 4.7e-23 112.1 184 40.8
AT5G03480 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 1.4e-22 110.5 155 45.8
Carub.0003s0820 Capsella rubella HOM05D005207 ORTHO05D012773 1.9e-19 100.1 168 39.9
Carub.0006s0326 Capsella rubella HOM05D005207 ORTHO05D012773 3.5e-18 95.9 207 34.8
BcaB06g28378 Brassica carinata HOM05D005207 ORTHO05D010629 1.4e-11 73.9 144 33.3
Carub.0006s0144 Capsella rubella HOM05D005207 ORTHO05D011102 1.4e-11 73.9 133 33.8
A10p29730 Brassica napus HOM05D005207 ORTHO05D011102 1.9e-11 73.6 119 38.7
BraA10t45015Z Brassica rapa HOM05D005207 ORTHO05D011102 1.9e-11 73.6 119 38.7
BcaB01g06058 Brassica carinata HOM05D005207 ORTHO05D039226 5.4e-11 72.0 126 36.5
BcaB06g28876 Brassica carinata HOM05D005207 ORTHO05D010629 7.1e-11 71.6 147 34.0
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 9.3e-11 71.2 171 32.2
A03p03410 Brassica napus HOM05D000033 ORTHO05D005368 1.2e-10 70.9 109 37.6
BraA03t09691Z Brassica rapa HOM05D000033 ORTHO05D005368 1.2e-10 70.9 109 37.6
A04p23300 Brassica napus HOM05D005207 ORTHO05D010629 2.1e-10 70.1 156 32.1
C03p02970 Brassica napus HOM05D005207 ORTHO05D011102 2.1e-10 70.1 116 36.2
A03p02800 Brassica napus HOM05D005207 ORTHO05D011102 2.7e-10 69.7 116 39.7
BraA03t09643Z Brassica rapa HOM05D005207 ORTHO05D011102 2.7e-10 69.7 116 39.7
Carub.0006s0188 Capsella rubella HOM05D005207 ORTHO05D011102 2.7e-10 69.7 123 35.8
BolC9t59760H Brassica oleracea HOM05D005207 ORTHO05D011102 3.5e-10 69.3 171 34.5
CARHR210960 Cardamine hirsuta HOM05D005207 ORTHO05D011102 6.0e-10 68.6 158 29.7
BraA10t45014Z Brassica rapa HOM05D005207 ORTHO05D011102 1.0e-09 67.8 120 39.2
BcaB01g06028 Brassica carinata HOM05D005207 ORTHO05D016117 1.3e-09 67.4 154 29.9
C03p03300 Brassica napus HOM05D005207 ORTHO05D016117 1.3e-09 67.4 154 29.9
BolC3t12873H Brassica oleracea HOM05D005207 ORTHO05D016117 1.3e-09 67.4 154 29.9
BraA04t17858Z Brassica rapa HOM05D005207 ORTHO05D010629 1.3e-09 67.4 159 32.7
A03p02850 Brassica napus HOM05D005207 ORTHO05D016117 1.8e-09 67.0 154 29.9
C06p50330 Brassica napus HOM05D005207 ORTHO05D010629 1.8e-09 67.0 170 30.0
BraA03t09649Z Brassica rapa HOM05D005207 ORTHO05D016117 1.8e-09 67.0 154 29.9
AL6G12860 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.3e-09 66.6 55 50.9
BcaB01g06024 Brassica carinata HOM05D005207 ORTHO05D010629 2.3e-09 66.6 154 29.9
C03p03250 Brassica napus HOM05D005207 ORTHO05D016117 2.3e-09 66.6 154 30.5
BolC3t12869H Brassica oleracea HOM05D005207 ORTHO05D016117 2.3e-09 66.6 154 30.5
BcaC02g08006 Brassica carinata HOM05D005207 ORTHO05D010629 3.0e-09 66.2 102 37.3
BcaC08g47266 Brassica carinata HOM05D005207 ORTHO05D010629 3.0e-09 66.2 170 29.4
C03p03270 Brassica napus HOM05D005207 ORTHO05D016117 3.0e-09 66.2 153 28.1
C04p59510 Brassica napus HOM05D005207 ORTHO05D010629 3.0e-09 66.2 102 37.3
BolC3t12870H Brassica oleracea HOM05D005207 ORTHO05D016117 3.0e-09 66.2 153 28.1
BolC4t27455H Brassica oleracea HOM05D005207 ORTHO05D010629 3.0e-09 66.2 102 37.3
AL5G22900 Arabidopsis lyrata HOM05D025973 ORTHO05D012773 3.9e-09 65.9 48 60.4
BcaC01g05826 Brassica carinata HOM05D005207 ORTHO05D010629 3.9e-09 65.9 104 38.5
BcaC05g26763 Brassica carinata HOM05D005207 ORTHO05D021650 3.9e-09 65.9 169 31.4
A03p02860 Brassica napus HOM05D005207 ORTHO05D016117 3.9e-09 65.9 155 31.0
C06p50420 Brassica napus HOM05D005207 ORTHO05D010629 3.9e-09 65.9 170 29.4
BraA03t09648Z Brassica rapa HOM05D005207 ORTHO05D016117 3.9e-09 65.9 155 31.0
BcaB01g04188 Brassica carinata HOM05D005207 ORTHO05D011102 5.1e-09 65.5 155 29.0
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 6.7e-09 65.1 177 31.6
BcaB06g29180 Brassica carinata HOM05D005207 ORTHO05D010629 6.7e-09 65.1 93 39.8
C03p03220 Brassica napus HOM05D005207 ORTHO05D011102 8.7e-09 64.7 122 36.1
BcaB01g06000 Brassica carinata HOM05D005207 ORTHO05D010629 1.1e-08 64.3 140 30.7
C06p50450 Brassica napus HOM05D005207 ORTHO05D010629 1.1e-08 64.3 155 31.6
BraA07t31720Z Brassica rapa HOM05D005207 ORTHO05D010629 1.1e-08 64.3 149 32.2
BcaB01g05675 Brassica carinata HOM05D005207 ORTHO05D010629 1.5e-08 63.9 148 31.8
BolC3t13212H Brassica oleracea HOM05D005207 ORTHO05D011102 1.9e-08 63.5 126 34.9
BcaB06g28704 Brassica carinata HOM05D005207 ORTHO05D010629 2.5e-08 63.2 152 32.2
BcaC06g32380 Brassica carinata HOM05D005207 ORTHO05D011102 2.5e-08 63.2 117 35.0
BcaC06g32383 Brassica carinata HOM05D005207 ORTHO05D011102 2.5e-08 63.2 127 35.4
C09p70090 Brassica napus HOM05D005207 ORTHO05D011102 2.5e-08 63.2 119 37.8
C09p70110 Brassica napus HOM05D005207 ORTHO05D011102 2.5e-08 63.2 117 35.0
BolC9t59752H Brassica oleracea HOM05D005207 ORTHO05D011102 2.5e-08 63.2 119 37.8
BolC9t59754H Brassica oleracea HOM05D005207 ORTHO05D011102 2.5e-08 63.2 117 35.0
AL6G14890 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 3.3e-08 62.8 117 34.2
BcaC02g08007 Brassica carinata HOM05D005207 ORTHO05D010629 3.3e-08 62.8 104 36.5
BcaC02g08009 Brassica carinata HOM05D005207 ORTHO05D010629 3.3e-08 62.8 104 36.5
BcaNung06579 Brassica carinata HOM05D005207 ORTHO05D011102 3.3e-08 62.8 87 42.5
A03p02820 Brassica napus HOM05D005207 ORTHO05D011102 3.3e-08 62.8 122 35.2
C04p59480 Brassica napus HOM05D005207 ORTHO05D010629 3.3e-08 62.8 104 36.5
C04p59500 Brassica napus HOM05D005207 ORTHO05D010629 3.3e-08 62.8 104 36.5
BolC4t27457H Brassica oleracea HOM05D005207 ORTHO05D010629 3.3e-08 62.8 113 34.5
BraA03t09645Z Brassica rapa HOM05D005207 ORTHO05D011102 3.3e-08 62.8 122 35.2
A04p23290 Brassica napus HOM05D005207 ORTHO05D010629 4.3e-08 62.4 102 34.3
C04p59490 Brassica napus HOM05D005207 ORTHO05D010629 4.3e-08 62.4 156 30.8
C06p50380 Brassica napus HOM05D005207 ORTHO05D010629 4.3e-08 62.4 168 29.2
BcaB01g06006 Brassica carinata HOM05D005207 ORTHO05D010629 5.6e-08 62.0 141 31.9
BcaB01g06007 Brassica carinata HOM05D005207 ORTHO05D011102 5.6e-08 62.0 141 31.9
BcaC06g32559 Brassica carinata HOM05D005207 ORTHO05D011102 5.6e-08 62.0 120 33.3
Carub.0006s0189 Capsella rubella HOM05D005207 ORTHO05D011102 5.6e-08 62.0 123 33.3
A07p41910 Brassica napus HOM05D005207 ORTHO05D010629 7.4e-08 61.6 149 31.5
C03p02980 Brassica napus HOM05D005207 ORTHO05D039260 1.3e-07 60.8 138 30.4
AL6G15310 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 1.6e-07 60.5 123 33.3
BcaC06g32555 Brassica carinata HOM05D005207 ORTHO05D011102 1.6e-07 60.5 126 33.3
BcaC07g42014 Brassica carinata HOM05D005207 ORTHO05D024328 2.1e-07 60.1 167 29.3
C08p50700 Brassica napus HOM05D005207 ORTHO05D024328 2.1e-07 60.1 167 29.3
BolC8t52598H Brassica oleracea HOM05D005207 ORTHO05D024328 2.1e-07 60.1 167 28.7
BraA04t18460Z Brassica rapa HOM05D005207 ORTHO05D010629 2.1e-07 60.1 116 34.5
BcaC02g08008 Brassica carinata HOM05D005207 ORTHO05D010629 2.8e-07 59.7 159 30.8
A03p07940 Brassica napus HOM05D002922 ORTHO05D024472 2.8e-07 59.7 139 33.1
BcaC02g12854 Brassica carinata HOM05D005207 ORTHO05D010629 3.7e-07 59.3 111 34.2
A09p66540 Brassica napus HOM05D005207 ORTHO05D024328 3.7e-07 59.3 167 29.3
BraA09t41992Z Brassica rapa HOM05D005207 ORTHO05D024328 3.7e-07 59.3 167 29.3
BcaB01g05240 Brassica carinata HOM05D002922 ORTHO05D024472 6.2e-07 58.5 139 32.4
C03p09150 Brassica napus HOM05D002922 ORTHO05D024472 6.2e-07 58.5 139 32.4
BolC3t13412H Brassica oleracea HOM05D002922 ORTHO05D024472 6.2e-07 58.5 139 32.4
BraA03t10119Z Brassica rapa HOM05D002922 ORTHO05D024472 6.2e-07 58.5 139 33.1
Aa31LG8G10640 Aethionema arabicum HOM05D001653 ORTHO05D001751 8.1e-07 58.2 177 31.6
A04p30470 Brassica napus HOM05D005207 ORTHO05D010629 8.1e-07 58.2 116 33.6
C04p59240 Brassica napus HOM05D005207 ORTHO05D010629 2.4e-06 56.6 101 35.6
BolC4t27435H Brassica oleracea HOM05D005207 ORTHO05D010629 2.4e-06 56.6 101 35.6
BcaB01g05983 Brassica carinata HOM05D005207 ORTHO05D039260 3.1e-06 56.2 128 29.7
AL6G12550 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.3e-06 55.5 50 48.0
Thhalv10021355m.g Eutrema salsugineum HOM05D005207 ORTHO05D021650 9.0e-06 54.7 176 27.3


User provided reference genes

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