Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.5e-220 767.7 411 100.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.7e-212 741.9 411 97.1
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.6e-207 725.3 412 95.1
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.5e-202 709.5 412 92.7
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.5e-199 699.5 412 90.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 6.0e-196 687.6 412 89.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-195 686.4 412 88.6
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 5.1e-195 684.5 412 89.1
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.5e-194 682.9 412 88.1
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.5e-194 682.9 412 89.1
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 3.3e-194 681.8 407 89.7
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.6e-191 672.2 412 86.9
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.4e-183 645.2 412 85.4
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.6e-177 625.2 407 82.3
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.4e-173 612.5 526 69.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-160 569.3 412 72.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.3e-160 568.2 412 71.8
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 5.3e-160 568.2 412 71.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.9e-158 562.4 412 70.4
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 6.5e-158 561.2 427 69.1
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.9e-157 559.7 414 72.5
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.2e-157 558.9 412 70.6
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 7.1e-157 557.8 412 70.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.6e-156 556.6 409 72.1
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.5e-156 555.4 413 69.5
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.5e-156 555.4 414 70.3
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 6.1e-156 554.7 414 69.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.9e-156 554.3 412 70.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.3e-155 553.5 414 71.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.8e-155 553.1 407 72.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.3e-155 552.7 409 70.4
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.0e-155 552.4 409 72.9
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.0e-155 552.4 416 69.7
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 5.1e-155 551.6 412 69.9
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.7e-155 550.8 416 69.0
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 8.7e-155 550.8 408 72.5
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.5e-154 550.1 416 68.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.5e-154 550.1 412 69.4
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.9e-154 549.7 412 69.7
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.5e-154 549.3 416 69.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 5.7e-154 548.1 415 68.7
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 5.7e-154 548.1 415 68.7
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 7.4e-154 547.7 408 70.3
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 7.4e-154 547.7 415 70.4
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.6e-153 546.6 414 70.3
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.2e-153 546.2 416 68.3
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.2e-153 546.2 416 69.2
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.8e-152 543.1 412 68.2
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.8e-152 543.1 415 69.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.4e-152 542.7 412 68.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.4e-152 542.7 414 67.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.4e-152 542.7 412 68.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 3.1e-152 542.3 409 72.1
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.9e-152 541.2 414 69.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 6.9e-152 541.2 407 69.8
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.2e-151 540.4 412 67.2
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.2e-151 540.4 412 70.6
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.0e-151 539.7 415 70.4
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.6e-151 539.3 414 68.4
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.4e-151 538.9 412 68.4
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.4e-151 538.9 408 68.9
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 7.7e-151 537.7 414 67.9
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 7.7e-151 537.7 414 67.9
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 5.0e-150 535.0 409 71.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 5.0e-150 535.0 412 69.9
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-149 533.5 412 68.4
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.9e-149 533.1 418 68.4
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 3.2e-149 532.3 412 67.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 4.2e-149 531.9 406 68.0
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 5.5e-149 531.6 398 69.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.2e-149 531.2 418 68.2
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.2e-148 530.4 407 68.8
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.2e-148 530.4 412 68.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.6e-148 530.0 410 68.3
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.6e-148 530.0 406 67.7
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.6e-148 528.5 407 68.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.9e-148 527.7 414 68.4
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 7.9e-148 527.7 410 70.2
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.8e-147 526.6 407 67.6
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.0e-146 523.1 448 62.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.5e-146 522.7 410 66.6
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 9.7e-146 520.8 413 68.0
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 9.7e-146 520.8 412 65.5
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.7e-145 520.0 410 67.6
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.2e-145 519.6 412 68.0
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.7e-145 518.8 412 67.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 4.8e-145 518.5 411 67.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.8e-144 516.5 406 65.0
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.1e-144 515.8 418 65.3
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.1e-144 515.4 444 62.8
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.3e-144 515.0 413 72.9
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.6e-143 512.7 406 64.5
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 2.9e-142 509.2 415 66.3
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 6.5e-142 508.1 412 65.0
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 8.5e-142 507.7 412 65.0
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.4e-141 506.9 407 66.8
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.5e-141 506.1 409 66.3
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.5e-141 506.1 411 66.7
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.5e-141 505.0 407 65.6
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 5.5e-141 505.0 407 65.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-140 503.4 412 61.4
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 2.3e-139 499.6 406 61.8
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.9e-139 498.8 412 63.3
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 2.6e-138 496.1 405 62.7
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.7e-137 493.4 460 61.1
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.7e-137 493.4 405 62.7
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.1e-136 489.2 450 62.2
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.1e-136 487.6 411 62.0
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 7.7e-135 484.6 412 65.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-133 480.7 412 59.2
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 7.2e-133 478.0 408 62.0
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.0e-131 474.2 415 63.6
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.7e-131 471.5 407 63.4
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.1e-130 470.7 438 57.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 4.8e-129 465.3 405 59.3
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.4e-128 463.8 422 62.3
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.4e-128 463.8 412 63.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.9e-125 453.4 412 57.5
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 9.4e-125 451.1 412 57.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.4e-120 437.2 367 60.2
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 7.0e-120 434.9 338 70.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.7e-116 422.9 323 68.7
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.2e-113 413.3 382 58.1
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.3e-109 399.4 412 53.6
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.3e-109 399.4 412 53.6
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 4.7e-108 395.6 441 54.4
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 8.9e-107 391.3 410 51.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-106 391.0 413 61.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.5e-106 388.3 296 67.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 8.3e-105 384.8 449 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 3.0e-94 349.7 407 48.9
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.1e-85 321.2 407 51.4
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.6e-84 316.2 272 69.5
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 7.1e-80 302.0 415 43.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 3.0e-70 270.0 211 68.7
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 3.1e-67 260.0 438 41.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.9e-66 255.0 157 90.4
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.9e-65 253.4 363 42.7
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 6.0e-55 219.2 304 43.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.3e-53 213.0 153 81.0
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 8.5e-33 145.6 106 70.8
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.1e-30 136.3 193 49.2
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 3.1e-27 127.1 423 29.3
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 4.1e-27 126.7 129 58.1
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.1e-23 114.4 105 52.4
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.5e-21 108.2 253 36.0
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.3e-21 107.1 73 71.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 5.9e-18 96.3 60 75.0
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 3.8e-17 93.6 440 26.4
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.9e-16 91.3 457 24.9
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 9.4e-16 89.0 67 59.7
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.2e-15 88.6 84 59.5
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.6e-13 80.9 386 26.7
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.3e-12 78.6 68 55.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.7e-12 77.0 70 55.7
AL8G27630 Arabidopsis lyrata HOM05D004576 ORTHO05D079524 1.6e-10 71.6 107 48.6
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 2.7e-10 70.9 86 50.0
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.9e-10 69.7 61 62.3
A02p41980 Brassica napus HOM05D028671 ORTHO05D005321 5.0e-09 66.6 71 46.5
BcaB05g21557 Brassica carinata HOM05D000313 ORTHO05D000065 7.2e-08 62.8 59 55.9
BcaB04g19450 Brassica carinata HOM05D000313 ORTHO05D000065 9.4e-08 62.4 59 55.9
A03p38390 Brassica napus HOM05D065861 ORTHO05D101305 8.0e-07 59.3 36 83.3
A06p47450 Brassica napus HOM05D065861 ORTHO05D102613 8.0e-07 59.3 36 83.3
C07p09850 Brassica napus HOM05D028671 ORTHO05D102260 1.0e-06 58.9 62 48.4
A03p05020 Brassica napus HOM05D028671 ORTHO05D103826 1.8e-06 58.2 112 33.9


User provided reference genes

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