Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.7e-285 983.0 519 100.0
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.1e-177 626.3 520 70.6
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.8e-174 615.1 526 69.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.1e-173 612.5 520 69.2
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.3e-171 607.1 520 67.7
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 2.2e-171 606.3 520 68.5
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 8.4e-171 604.4 519 67.4
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.5e-167 592.8 520 66.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 5.6e-167 591.7 520 65.4
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.1e-166 589.7 520 65.8
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 6.2e-166 588.2 520 65.0
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.5e-164 583.6 515 66.0
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 6.5e-163 578.2 520 64.8
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.8e-155 552.4 520 63.1
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.3e-151 538.9 514 61.3
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.3e-136 490.0 519 53.2
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 4.8e-134 482.3 520 54.2
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.1e-133 481.1 520 52.3
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.4e-133 480.7 519 52.2
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.1e-133 479.6 519 52.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.1e-133 479.6 519 52.0
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.1e-133 479.6 519 53.8
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 5.3e-133 478.8 520 52.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 7.0e-133 478.4 535 52.0
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.6e-132 477.2 519 52.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.2e-131 473.4 524 51.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.8e-131 472.6 523 52.8
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 6.5e-131 471.9 519 52.4
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.5e-131 471.5 523 52.4
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.5e-130 470.7 523 52.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.9e-130 470.3 521 53.0
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.5e-130 469.9 523 52.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.5e-130 469.9 519 51.8
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 3.2e-130 469.5 519 51.4
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.2e-130 469.5 519 51.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.2e-130 469.5 521 51.4
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 4.2e-130 469.2 519 51.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 7.2e-130 468.4 521 52.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 9.4e-130 468.0 519 51.4
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.2e-129 467.6 514 52.1
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.2e-129 467.6 514 53.5
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.6e-129 467.2 521 52.0
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.6e-129 467.2 521 52.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.1e-129 466.8 523 52.6
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 4.7e-129 465.7 520 50.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 4.7e-129 465.7 520 50.8
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 6.1e-129 465.3 516 51.0
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.0e-129 464.9 524 51.5
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 8.0e-129 464.9 514 52.5
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.0e-128 464.5 520 51.3
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.4e-128 464.2 519 50.5
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.4e-128 464.2 513 52.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.8e-128 463.8 519 51.3
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.8e-128 463.8 520 51.7
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.3e-128 463.4 519 50.5
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 4.0e-128 462.6 519 52.6
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.0e-127 460.3 519 52.6
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.6e-127 459.9 516 51.2
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.3e-127 459.5 516 50.8
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.3e-126 457.6 524 51.9
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.7e-126 457.2 524 51.9
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.2e-126 456.8 519 49.9
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.2e-126 456.8 520 52.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.8e-126 456.4 519 51.1
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.8e-126 456.4 514 52.7
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.8e-126 456.4 520 52.3
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.7e-126 456.1 520 51.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.4e-125 454.1 519 51.6
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 5.3e-125 452.2 520 49.8
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 7.0e-125 451.8 516 53.5
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 7.0e-125 451.8 520 50.6
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.6e-124 450.7 515 51.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.6e-124 450.7 515 49.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 2.7e-124 449.9 512 49.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.0e-123 448.0 520 50.2
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.7e-123 447.2 514 49.4
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.9e-123 446.4 515 50.3
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.1e-122 444.5 514 49.2
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.1e-122 444.5 519 48.7
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.9e-122 443.7 516 51.9
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.9e-122 443.7 503 50.7
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 3.2e-122 443.0 515 50.5
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.2e-121 441.0 519 50.7
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.6e-121 440.7 520 55.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.6e-121 440.7 514 48.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-121 440.7 514 48.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.3e-120 436.8 519 48.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.3e-120 436.8 562 46.8
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 3.0e-120 436.4 517 50.1
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 6.8e-120 435.3 551 47.2
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.0e-119 433.7 519 50.1
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 4.4e-119 432.6 521 50.9
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 5.7e-119 432.2 514 47.1
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.8e-119 431.4 523 49.7
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 9.8e-119 431.4 515 49.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 4.8e-118 429.1 526 47.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 6.3e-118 428.7 520 48.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.4e-117 426.8 514 49.0
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-116 424.1 519 45.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.5e-116 422.9 519 48.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.3e-115 421.0 519 47.4
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.8e-115 419.5 515 47.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.8e-115 419.5 515 47.2
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 3.8e-115 419.5 514 46.5
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 4.2e-114 416.0 567 46.2
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 4.2e-114 416.0 512 51.6
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 4.7e-113 412.5 513 45.8
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.1e-113 412.1 520 46.9
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.0e-112 409.5 513 45.4
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.0e-111 407.1 519 47.8
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-109 401.4 519 43.7
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 7.7e-108 395.2 487 50.7
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.0e-107 394.8 516 46.3
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.3e-107 393.7 545 42.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 7.3e-106 388.7 530 46.6
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.1e-105 387.1 514 45.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 8.0e-105 385.2 516 43.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.8e-104 384.0 515 43.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.8e-104 384.0 520 43.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.0e-96 358.2 474 43.0
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 3.0e-91 340.1 446 47.5
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.9e-90 337.4 431 47.3
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.5e-90 335.1 519 39.7
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.5e-90 335.1 519 39.7
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.6e-89 334.3 517 39.7
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.4e-88 331.3 491 41.5
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.3e-88 330.5 556 40.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 7.1e-85 318.9 521 46.4
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 3.3e-82 310.1 549 40.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 9.5e-82 308.5 410 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 8.6e-75 285.4 513 36.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 5.6e-74 282.7 203 70.9
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.2e-70 270.8 151 94.7
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.0e-59 235.3 522 32.0
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.0e-59 233.8 517 36.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 8.7e-59 232.3 390 44.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-56 225.3 147 85.0
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 9.6e-50 202.2 540 32.0
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.5e-39 168.3 471 30.6
AL8G27550 Arabidopsis lyrata HOM05D000129 ORTHO05D000144 2.9e-38 164.1 88 94.3
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.3e-34 150.6 187 52.9
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.2e-31 142.1 105 69.5
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.4e-31 140.6 408 28.7
AT5G53010 Arabidopsis thaliana HOM05D000129 ORTHO05D000144 1.9e-29 134.8 118 65.3
Thhalv10012578m.g Eutrema salsugineum HOM05D000129 ORTHO05D000144 9.7e-26 122.5 88 75.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 9.7e-26 122.5 128 56.2
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.4e-24 118.6 105 54.3
AL8G27620 Arabidopsis lyrata HOM05D000129 ORTHO05D000144 7.2e-21 106.3 88 67.0
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 7.2e-21 106.3 73 71.2
C03p18050 Brassica napus HOM05D000129 ORTHO05D000144 3.6e-20 104.0 86 64.0
BolC3t14210H Brassica oleracea HOM05D000129 ORTHO05D000144 4.7e-20 103.6 88 62.5
BcaB01g04220 Brassica carinata HOM05D000129 ORTHO05D000144 6.1e-20 103.2 86 64.0
BcaC01g06214 Brassica carinata HOM05D000129 ORTHO05D000144 6.1e-20 103.2 88 63.6
BcaC01g06215 Brassica carinata HOM05D000129 ORTHO05D000144 1.4e-19 102.1 88 63.6
C03p18030 Brassica napus HOM05D000129 ORTHO05D000144 1.4e-19 102.1 88 63.6
BolC3t14209H Brassica oleracea HOM05D000129 ORTHO05D000144 1.4e-19 102.1 88 63.6
CARHR266010 Cardamine hirsuta HOM05D000129 ORTHO05D000144 5.2e-19 100.1 88 65.9
BcaB01g04218 Brassica carinata HOM05D000129 ORTHO05D000144 6.7e-19 99.8 84 63.1
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 4.8e-17 93.6 60 73.3
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.1e-16 92.4 56 78.6
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-15 88.6 84 59.5
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.5e-15 87.4 67 58.2
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 7.2e-13 79.7 214 27.6
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 4.7e-12 77.0 70 55.7
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.1e-12 76.6 68 55.9
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.7e-10 70.1 61 62.3
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.3e-09 68.9 265 27.2
AL8G27630 Arabidopsis lyrata HOM05D004576 ORTHO05D079524 1.4e-08 65.5 111 45.0
A02p41980 Brassica napus HOM05D028671 ORTHO05D005321 2.4e-08 64.7 71 45.1
THA.LOC104813265 Tarenaya hassleriana HOM05D000129 ORTHO05D000144 1.6e-07 62.0 91 42.9
BcaB05g21557 Brassica carinata HOM05D000313 ORTHO05D000065 3.5e-07 60.8 59 54.2
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.5e-07 60.8 164 24.4
BcaB04g19450 Brassica carinata HOM05D000313 ORTHO05D000065 4.5e-07 60.5 59 54.2
A01p17290 Brassica napus HOM05D000129 ORTHO05D000144 2.2e-06 58.2 75 46.7
BraA01t01684Z Brassica rapa HOM05D000129 ORTHO05D000144 2.2e-06 58.2 75 46.7
C07p09850 Brassica napus HOM05D028671 ORTHO05D102260 5.0e-06 57.0 62 46.8
Potri.008G008100 Populus trichocarpa HOM05D000129 ORTHO05D000144 5.0e-06 57.0 102 40.2
BcaC09g50662 Brassica carinata HOM05D000129 ORTHO05D000144 8.5e-06 56.2 90 40.0
C01p21770 Brassica napus HOM05D000129 ORTHO05D000144 8.5e-06 56.2 90 40.0
BolC1t02101H Brassica oleracea HOM05D000129 ORTHO05D000144 8.5e-06 56.2 90 40.0
Sabra08G0004600 Salix brachista HOM05D000129 ORTHO05D000144 8.5e-06 56.2 105 39.0


User provided reference genes

Program Settings