Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 0.0e+00 1849.3 950 100.0
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 0.0e+00 1669.8 952 90.9
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 0.0e+00 1604.7 955 87.1
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 0.0e+00 1577.4 951 85.5
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 0.0e+00 1513.8 955 83.2
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 0.0e+00 1438.7 955 79.4
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1391.7 958 77.3
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1387.5 957 77.0
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1386.7 957 76.9
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 0.0e+00 1382.9 958 76.9
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1380.5 956 76.5
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1380.5 956 76.5
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1367.1 957 76.3
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 0.0e+00 1263.8 961 71.9
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 7.9e-284 980.7 973 57.1
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 1.2e-242 844.0 569 75.9
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 8.6e-238 827.8 954 54.2
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 3.4e-194 682.9 1012 43.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 3.5e-191 672.9 1012 43.1
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.0e-190 671.4 1023 42.8
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.6e-188 664.1 1026 43.5
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 6.2e-188 662.1 1020 42.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 5.8e-186 655.6 1025 43.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.9e-185 653.3 1017 43.3
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 1.3e-182 644.4 1012 42.4
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 2.3e-182 643.7 1072 41.0
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 5.1e-182 642.5 1009 42.4
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 2.5e-181 640.2 1016 41.9
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 3.3e-181 639.8 1019 41.2
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 2.8e-180 636.7 1012 41.9
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.6e-178 630.2 1018 41.3
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.9e-176 624.0 990 42.0
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 4.2e-176 622.9 1013 41.4
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.6e-172 610.9 994 41.8
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.9e-168 597.4 1010 40.5
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 2.6e-162 577.0 1020 39.7
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.6e-162 577.0 1012 39.6
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.2e-161 573.9 1048 39.5
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.9e-160 570.9 1019 39.2
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.5e-160 569.3 1014 39.5
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.4e-160 568.5 1016 39.3
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.7e-159 567.0 1016 39.2
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.4e-154 550.1 989 39.4
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 3.2e-152 543.5 1025 40.1
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 4.7e-151 539.7 891 40.3
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 2.2e-148 530.8 1064 35.8
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 4.8e-148 529.6 1035 38.7
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.8e-147 527.7 1071 35.7
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 4.1e-147 526.6 1010 38.0
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 5.3e-147 526.2 1012 38.3
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.0e-147 525.8 1018 38.0
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 4.5e-146 523.1 1026 38.4
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 5.5e-144 516.2 1007 38.2
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.7e-143 513.8 1009 37.4
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 6.7e-142 509.2 1025 38.0
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 5.7e-141 506.1 1004 37.2
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.8e-140 503.8 981 38.1
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.8e-140 503.8 1001 37.2
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 3.6e-135 486.9 1017 37.9
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.6e-135 486.9 1002 36.3
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.5e-133 481.5 873 38.5
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.7e-133 479.6 834 38.6
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 7.0e-131 472.6 1020 37.7
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.6e-130 471.5 1036 36.1
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.7e-130 470.7 989 36.3
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 4.5e-130 469.9 894 37.9
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 6.5e-129 466.1 1038 35.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.1e-128 465.3 990 36.2
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.2e-128 463.4 1019 34.3
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 7.2e-128 462.6 990 36.1
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.0e-127 459.1 795 40.3
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 4.0e-126 456.8 979 36.2
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 7.5e-125 452.6 996 36.0
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 9.8e-125 452.2 994 35.2
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.3e-124 451.8 1017 35.0
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.7e-124 451.4 1009 37.1
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 4.9e-124 449.9 1005 34.6
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 2.0e-122 444.5 319 75.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.7e-122 444.1 1024 35.2
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.3e-121 441.8 1014 35.9
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 1.7e-121 441.4 1001 35.5
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.7e-121 441.4 1019 34.9
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 6.6e-121 439.5 992 36.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.9e-120 438.0 985 35.5
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.8e-119 434.1 1030 35.0
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 4.7e-119 433.3 1028 34.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.0e-119 432.6 785 39.9
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.3e-118 431.0 995 35.8
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.5e-117 428.3 996 35.6
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.0e-117 427.9 1008 34.2
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.7e-116 423.7 995 35.1
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 7.8e-114 416.0 992 35.8
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.1e-111 407.9 861 37.4
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.6e-106 390.2 902 33.6
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.6e-105 386.0 943 34.3
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 5.8e-101 373.2 935 33.7
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 4.9e-100 370.2 1050 32.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 2.5e-88 331.3 667 37.3
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 4.3e-88 330.5 1004 30.5
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.7e-84 318.5 1019 31.5
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.9e-84 317.8 632 35.8
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 8.4e-84 316.2 1000 30.5
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 2.1e-82 311.6 877 31.1
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.1e-82 311.6 924 31.0
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 9.6e-80 302.8 480 41.7
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.3e-73 282.3 1014 28.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 5.8e-69 266.9 483 39.5
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.3e-63 249.2 608 34.9
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.6e-61 240.0 479 38.2
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 5.5e-59 233.8 1091 26.0
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 9.3e-59 233.0 926 28.8
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.2e-58 232.6 340 44.7
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.5e-56 224.9 319 42.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.4e-56 223.4 427 40.3
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 8.7e-49 199.9 394 37.8
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 1.3e-44 186.0 167 62.9
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.6e-42 177.6 251 47.0
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 4.7e-34 151.0 253 43.5
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.3e-33 148.7 314 35.0
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.0e-32 145.6 366 32.8
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 8.2e-31 140.2 303 36.3
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.9e-19 102.4 983 22.7
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.3e-12 79.7 182 38.5
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.6e-10 72.8 165 36.4
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 8.8e-09 67.0 91 52.7
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 5.7e-08 64.3 126 35.7
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 3.7e-07 61.6 98 46.9


User provided reference genes

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