Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 2236.1 1168 100.0
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 2101.6 1167 93.7
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1971.4 1189 88.4
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1921.4 1183 85.8
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1911.7 1176 85.2
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1847.8 1183 82.4
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1837.8 1183 82.4
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1836.2 1183 82.3
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 0.0e+00 1835.5 1184 82.8
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1827.4 1184 81.9
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1827.0 1184 81.9
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 1827.0 1184 81.9
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 1748.8 1186 78.2
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1489.2 1173 69.0
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1130.5 1248 53.2
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1128.2 1073 58.2
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1127.5 1217 54.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1118.2 1193 54.1
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1116.7 1119 56.6
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1110.9 1072 57.9
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1101.7 1082 56.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1095.5 1125 55.6
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1092.0 1227 52.2
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1084.7 1121 55.4
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 8.0e-312 1073.9 1230 51.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 6.1e-310 1067.8 1100 54.5
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 3.9e-309 1065.1 1100 53.7
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 7.4e-308 1060.8 1125 54.4
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 7.4e-308 1060.8 1105 53.4
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 4.8e-307 1058.1 1086 54.8
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 3.1e-306 1055.4 1232 51.4
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 9.0e-306 1053.9 1132 52.5
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 2.6e-305 1052.4 1230 50.6
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.0e-304 1050.4 1102 53.7
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 4.2e-303 1045.0 1198 51.5
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 1.6e-302 1043.1 1261 48.9
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.6e-302 1042.0 1101 54.0
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 3.6e-302 1042.0 1238 50.9
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 6.7e-301 1037.7 1095 53.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 5.7e-300 1034.6 1283 50.0
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 4.8e-299 1031.6 1272 48.6
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 8.2e-299 1030.8 1232 50.2
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 2.6e-297 1025.8 1324 48.3
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.0e-296 1023.8 1169 50.8
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-295 1020.4 1111 53.2
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 2.1e-294 1016.1 1262 48.7
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 2.7e-294 1015.8 1267 49.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.0e-293 1013.8 1268 48.7
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 8.8e-293 1010.7 965 57.3
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 3.3e-292 1008.8 1225 49.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 4.4e-292 1008.4 1085 53.1
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.2e-291 1004.2 1271 48.4
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.8e-290 1003.0 1271 48.3
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.2e-289 1000.3 1102 51.0
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.0e-288 997.3 1246 47.5
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 8.5e-288 994.2 1129 50.8
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 3.9e-285 985.3 995 55.5
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.9e-281 971.5 1075 52.1
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 5.9e-281 971.5 1256 48.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 1.7e-280 969.9 1198 49.0
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.7e-280 969.9 1255 47.5
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 2.9e-280 969.1 1131 50.4
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 6.5e-280 968.0 1213 47.5
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.8e-277 959.9 1170 50.5
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 2.3e-277 959.5 1106 50.1
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 6.7e-277 958.0 1207 48.5
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.2e-276 957.2 1183 49.5
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.8e-274 949.9 1268 46.1
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 9.1e-274 947.6 1154 48.6
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.0e-273 946.4 1341 44.8
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 2.7e-273 946.0 1164 49.1
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 3.5e-273 945.7 1118 49.6
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 8.5e-272 941.0 1193 47.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 9.4e-271 937.6 930 56.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.2e-270 937.2 1228 47.3
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 3.6e-270 935.6 1176 47.7
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 2.8e-267 926.0 1168 47.2
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.3e-267 924.5 1097 50.1
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 4.1e-266 922.2 1307 44.6
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 5.4e-266 921.8 1219 46.2
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.3e-264 917.1 1241 47.0
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.8e-264 915.6 1206 46.8
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 4.7e-262 908.7 915 55.8
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 2.0e-257 893.3 1162 45.6
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 6.6e-256 888.3 1074 49.3
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 6.6e-248 861.7 1136 47.7
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.2e-242 842.8 981 49.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 8.6e-240 834.7 1293 42.5
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.1e-239 834.3 1316 41.9
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.1e-238 830.1 1130 45.6
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.3e-232 810.8 1093 45.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.9e-226 790.4 1198 42.7
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.1e-223 781.2 1162 42.9
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 5.8e-220 768.8 1117 45.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.3e-219 767.7 1233 41.5
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 3.8e-219 766.1 1165 42.5
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 7.1e-210 735.3 1147 41.8
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.7e-209 733.4 1178 40.5
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 6.2e-198 695.7 918 47.1
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.2e-196 691.4 1137 41.8
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.4e-196 689.9 899 46.1
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.2e-195 687.2 551 63.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.4e-184 651.4 515 65.8
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 5.0e-179 632.9 1217 38.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.5e-171 605.9 525 59.2
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.4e-168 598.2 1077 38.2
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 6.1e-161 572.8 1113 35.7
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 3.1e-141 507.3 1192 32.5
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 5.0e-131 473.4 682 42.5
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.4e-104 385.6 956 31.0
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.9e-86 323.9 505 42.4
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.0e-78 299.7 246 64.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 2.0e-66 258.8 300 54.3
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 1.4e-51 209.5 173 60.1
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.4e-51 209.5 168 62.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-50 206.1 231 45.9
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 8.5e-46 190.3 139 70.5
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 4.7e-36 157.9 612 26.1
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 5.7e-34 151.0 105 66.7
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.8e-30 138.3 97 69.1
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.0e-27 128.6 119 58.0
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 4.0e-27 128.3 84 69.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.2e-27 127.9 106 61.3
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 4.1e-24 118.2 227 35.7
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.9e-21 109.4 121 47.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 7.3e-21 107.5 121 49.6
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.8e-19 102.8 133 45.9
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.3e-19 102.4 115 50.4
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.2e-18 100.1 407 26.8
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-18 99.8 120 49.2
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 2.2e-17 95.9 115 47.8
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.2e-15 90.1 72 61.1
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 2.3e-11 75.9 90 44.4
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 8.3e-09 67.4 76 50.0
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.4e-08 66.6 64 50.0
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.2e-08 65.5 98 38.8


User provided reference genes

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