Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 0.0e+00 1213.7 615 100.0
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 0.0e+00 1120.9 615 93.0
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 0.0e+00 1108.6 614 89.6
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.1e-310 1069.3 615 86.8
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 9.0e-297 1023.1 618 83.2
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 4.5e-296 1020.8 614 82.9
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 1.2e-293 1012.7 609 83.4
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 3.5e-293 1011.1 609 82.9
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 4.6e-293 1010.7 609 83.3
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.9e-287 991.5 624 80.0
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.0e-276 956.4 651 76.2
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 2.2e-274 948.7 655 72.8
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 9.5e-238 827.0 600 70.2
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.1e-198 697.2 609 60.6
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 1.6e-197 693.3 628 59.2
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 3.6e-197 692.2 606 59.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 3.1e-196 689.1 619 60.3
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.9e-194 682.6 600 59.8
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.4e-193 679.5 628 57.5
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 8.7e-191 671.0 612 58.5
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 2.8e-189 666.0 591 60.2
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 1.4e-188 663.7 597 60.3
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 5.3e-188 661.8 606 58.3
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 1.2e-187 660.6 621 58.3
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 2.0e-187 659.8 601 58.6
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 9.9e-187 657.5 606 58.6
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 9.9e-187 657.5 621 56.4
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 1.3e-186 657.1 601 59.1
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 8.4e-186 654.4 605 58.3
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.1e-185 654.1 588 59.4
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-185 654.1 600 58.5
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-185 653.7 599 58.4
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 3.2e-185 652.5 606 57.1
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 4.2e-185 652.1 595 57.5
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 7.1e-185 651.4 622 55.3
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 9.3e-185 651.0 591 55.8
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.2e-184 650.6 599 56.9
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-184 650.2 574 59.9
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.6e-184 650.2 603 57.4
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.6e-184 650.2 629 56.0
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 2.1e-184 649.8 626 56.7
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 7.9e-184 647.9 619 55.6
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 7.9e-184 647.9 608 57.4
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-183 647.1 607 58.2
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.3e-183 647.1 594 57.9
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.3e-183 646.4 599 57.9
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 8.7e-183 644.4 598 57.2
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.1e-182 644.0 594 57.1
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.5e-182 643.7 598 57.2
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 1.5e-182 643.7 617 56.2
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 4.3e-182 642.1 619 57.0
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 4.3e-182 642.1 615 56.1
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.6e-181 640.2 598 59.0
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 2.8e-181 639.4 620 53.9
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 2.8e-181 639.4 619 55.3
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 2.8e-181 639.4 602 55.0
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.1e-180 637.5 594 55.7
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.4e-180 636.3 555 59.1
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 3.1e-180 636.0 595 58.2
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 9.0e-180 634.4 573 59.0
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.5e-179 633.6 604 56.1
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.3e-178 630.6 501 65.7
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-178 628.6 588 57.8
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 1.1e-177 627.5 621 54.3
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 3.2e-177 625.9 601 57.4
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 3.2e-177 625.9 594 54.4
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.2e-176 624.0 583 54.9
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 2.7e-176 622.9 645 52.1
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 7.9e-176 621.3 617 53.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 2.3e-175 619.8 611 54.7
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.5e-174 617.1 502 62.4
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 2.5e-174 616.3 624 53.4
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 9.6e-174 614.4 604 55.3
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 4.8e-173 612.1 609 54.7
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 9.0e-172 607.8 519 61.3
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.0e-167 594.3 573 55.8
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 1.0e-167 594.3 490 61.0
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.5e-163 580.5 515 58.3
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.5e-163 580.5 516 57.9
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 2.9e-162 576.2 516 61.6
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 8.5e-162 574.7 576 52.3
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 3.2e-161 572.8 479 62.6
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 5.7e-158 562.0 599 50.9
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-157 560.8 614 52.1
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 2.8e-157 559.7 496 60.7
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 6.5e-154 548.5 631 50.7
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 8.8e-151 538.1 573 49.2
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 4.1e-148 529.3 619 48.6
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 2.7e-144 516.5 544 52.6
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.4e-143 514.2 455 57.4
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.8e-143 513.8 434 62.9
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.8e-143 513.8 495 55.4
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 1.1e-142 511.1 463 57.7
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 8.2e-141 505.0 464 53.7
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 5.9e-139 498.8 479 52.4
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.7e-138 497.3 384 61.7
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 1.2e-120 438.0 626 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 2.0e-118 430.6 531 43.9
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 2.8e-117 426.8 600 43.8
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 5.9e-115 419.1 485 45.8
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.3e-113 412.9 356 60.4
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 1.7e-106 391.0 341 58.9
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 9.5e-105 385.2 358 56.1
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.9e-97 360.9 454 43.6
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 6.4e-93 345.9 497 44.7
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 3.9e-90 336.7 395 44.6
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 7.3e-89 332.4 307 58.6
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 4.2e-84 316.6 294 55.8
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 6.2e-64 249.6 197 58.9
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 2.2e-61 241.1 248 52.4
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.1e-60 238.8 397 34.5
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 1.9e-60 238.0 336 39.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.1e-55 222.2 174 58.6
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.0e-55 219.2 184 60.3
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-54 218.8 162 66.7
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-54 218.8 162 66.7
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-54 218.8 162 66.7
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-51 208.4 151 59.6
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 3.5e-51 207.2 230 50.4
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.5e-49 201.8 202 53.5
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.8e-48 197.6 194 55.2
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 2.5e-44 184.5 223 49.8
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.9e-37 161.0 158 48.7
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 2.1e-35 154.8 469 29.2
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 7.0e-31 139.8 226 39.8
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.3e-29 135.6 135 60.0
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.2e-29 134.8 116 53.4
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 6.5e-29 133.3 359 28.4
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 3.6e-27 127.5 133 46.6
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 4.7e-27 127.1 219 36.5
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 8.8e-26 122.9 76 72.4
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 5.9e-22 110.2 144 47.9
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-21 108.2 184 38.6
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-21 108.2 184 38.6
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-21 108.2 184 38.6
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-21 108.2 184 38.6
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-21 108.2 184 38.6
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-21 108.2 184 38.6
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-21 107.8 162 42.0
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.0e-18 99.4 136 39.0
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 1.4e-18 99.0 170 35.3
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.5e-17 95.5 91 62.6
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.4e-17 94.4 110 59.1
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.7e-14 83.2 44 77.3
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 1.5e-12 79.0 101 41.6
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-11 74.7 108 36.1
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 1.4e-10 72.4 85 41.2
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 2.0e-06 58.5 59 54.2
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 7.7e-06 56.6 36 63.9


User provided reference genes

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