Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 0.0e+00 1097.4 597 100.0
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.2e-253 879.8 598 80.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.3e-188 662.9 575 68.7
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.1e-181 639.8 632 63.3
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.0e-176 623.2 640 61.2
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 1.0e-148 531.2 469 69.1
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.2e-141 507.7 628 55.6
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 7.5e-123 445.3 607 50.7
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 2.9e-122 443.4 606 50.0
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 1.4e-121 441.0 606 49.8
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 5.8e-115 419.1 610 51.0
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.6e-112 411.0 635 46.5
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 7.8e-104 382.1 380 63.4
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.3e-98 364.8 629 44.0
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 1.3e-58 231.9 718 33.7
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.9e-57 228.0 717 33.2
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 4.2e-57 226.9 516 39.0
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.1e-52 212.2 704 32.5
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 5.9e-51 206.5 712 32.4
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 2.9e-50 204.1 664 31.9
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 6.5e-50 203.0 693 32.5
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.6e-48 198.4 446 37.9
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 4.7e-48 196.8 435 37.9
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 8.8e-47 192.6 735 32.2
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.5e-46 191.8 732 33.2
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 7.4e-46 189.5 645 32.4
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.7e-45 188.3 602 33.6
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.7e-45 188.3 691 31.3
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.1e-44 185.7 566 35.3
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 1.4e-44 185.3 701 32.0
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.8e-44 184.9 745 31.3
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 9.1e-44 182.6 436 37.2
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.5e-43 181.8 733 31.2
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 2.0e-43 181.4 729 30.9
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.7e-42 178.3 637 31.4
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.7e-42 178.3 676 30.3
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 2.9e-42 177.6 641 31.4
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 3.8e-42 177.2 640 30.9
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 1.4e-41 175.3 433 35.1
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 7.2e-41 172.9 650 31.8
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 9.4e-41 172.6 684 29.4
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.2e-40 172.2 647 30.8
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.7e-40 171.0 681 30.2
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.7e-40 170.2 676 29.7
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 4.7e-40 170.2 645 30.2
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 8.0e-40 169.5 676 29.6
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.0e-39 169.1 676 29.6
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.4e-39 168.7 660 32.1
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.8e-39 168.3 684 30.4
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.8e-39 168.3 748 30.6
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.3e-39 167.9 672 29.0
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.2e-39 166.8 679 30.8
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 6.7e-39 166.4 665 29.6
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 8.8e-39 166.0 647 33.2
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.1e-38 165.6 639 29.9
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 1.5e-38 165.2 723 30.7
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 2.0e-38 164.9 659 30.2
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.6e-38 164.5 633 33.5
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 5.7e-38 163.3 626 31.8
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 7.4e-38 162.9 648 30.6
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.7e-37 161.8 745 28.6
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.8e-37 161.0 698 30.4
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 3.7e-37 160.6 730 30.3
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 3.7e-37 160.6 618 29.6
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 4.8e-37 160.2 673 30.3
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 6.3e-37 159.8 437 34.1
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 8.2e-37 159.5 693 31.2
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 1.1e-36 159.1 638 29.9
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 1.4e-36 158.7 437 33.9
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.4e-36 158.7 635 33.7
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 3.1e-36 157.5 667 29.8
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 3.1e-36 157.5 707 29.6
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 5.3e-36 156.8 668 28.3
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 7.0e-36 156.4 678 31.1
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 7.0e-36 156.4 682 29.5
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.0e-35 154.8 708 29.8
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 2.0e-35 154.8 719 28.2
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 2.6e-35 154.5 536 31.7
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 7.7e-35 152.9 650 30.3
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 1.0e-34 152.5 708 29.2
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.3e-34 152.1 601 31.8
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 1.3e-34 152.1 644 32.1
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 1.7e-34 151.8 708 30.5
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 3.8e-34 150.6 693 30.0
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 4.2e-33 147.1 659 32.3
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 5.5e-33 146.7 724 29.3
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 5.5e-33 146.7 728 30.4
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.1e-32 144.8 499 33.5
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 8.0e-32 142.9 699 29.8
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.0e-31 142.5 456 35.1
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.8e-31 141.7 552 31.3
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 1.8e-31 141.7 670 29.6
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 2.3e-31 141.4 689 30.6
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 3.0e-31 141.0 657 29.5
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 1.5e-30 138.7 734 27.8
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 2.0e-30 138.3 719 28.4
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 3.3e-30 137.5 661 26.9
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.3e-30 137.5 699 28.8
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 5.7e-30 136.7 675 29.3
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 7.5e-30 136.3 576 30.4
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 9.7e-30 136.0 653 29.6
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.7e-29 135.2 769 27.8
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 2.8e-29 134.4 733 29.9
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 4.8e-29 133.7 488 32.4
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 8.3e-29 132.9 698 27.2
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 8.3e-29 132.9 720 29.7
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 1.4e-28 132.1 634 29.8
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.8e-28 131.7 674 29.8
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 1.8e-28 131.7 608 28.5
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.4e-28 131.3 694 26.5
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 2.4e-28 131.3 693 27.7
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 3.1e-28 131.0 532 32.1
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.2e-27 129.0 716 28.5
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.2e-27 129.0 701 27.2
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.6e-27 128.6 631 28.7
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 1.6e-27 128.6 712 27.1
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 3.5e-27 127.5 439 33.7
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.0e-26 125.9 693 27.3
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 3.8e-26 124.0 675 29.5
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 3.8e-26 124.0 654 27.4
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.1e-25 122.5 767 27.5
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.1e-25 122.5 682 27.7
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.5e-25 122.1 669 28.0
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 2.7e-24 117.9 653 28.3
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 4.7e-24 117.1 637 26.8
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 4.7e-24 117.1 471 31.4
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 1.8e-23 115.2 773 25.6
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.2e-22 112.5 565 29.2
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 1.5e-22 112.1 388 35.1
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.5e-22 112.1 596 28.9
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 3.4e-22 110.9 429 33.3
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 2.8e-21 107.8 622 26.0
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.1e-20 105.9 690 24.5
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.1e-20 105.9 443 30.9
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.1e-20 104.0 597 28.1
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 5.4e-20 103.6 667 27.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 1.3e-18 99.0 711 25.5
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 2.9e-18 97.8 576 30.2
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 6.6e-18 96.7 279 42.7
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 1.9e-17 95.1 357 37.3
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 3.6e-16 90.9 237 32.5
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.7e-16 90.5 621 26.1
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 6.1e-16 90.1 357 36.1
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.2e-14 85.9 611 24.9
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 2.6e-14 84.7 554 25.8
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 3.4e-14 84.3 379 35.1
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 5.7e-14 83.6 188 39.4
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.8e-13 81.3 261 39.1
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 4.9e-13 80.5 352 36.1
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.1e-12 79.3 357 35.6
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.1e-12 79.3 357 35.6
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.8e-12 78.6 589 25.1
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.8e-12 78.6 283 32.5
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.6e-11 75.5 404 27.5
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 2.0e-11 75.1 595 27.1
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 5.0e-10 70.5 609 25.6
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 6.1e-08 63.5 475 26.1
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 2.3e-07 61.6 615 25.0
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 3.1e-07 61.2 162 30.9
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 5.2e-07 60.5 724 23.9
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.2e-06 59.3 308 27.9
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.6e-06 58.2 293 26.3


User provided reference genes

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