Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.1e-112 410.2 243 100.0
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 7.8e-103 377.5 246 92.3
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.6e-100 369.8 248 89.5
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 4.7e-100 368.2 243 88.9
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 8.1e-100 367.5 245 84.9
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 2.2e-97 359.4 247 87.9
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.1e-96 357.1 244 86.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.2e-95 353.6 246 84.6
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 7.3e-93 344.4 247 78.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.0e-90 336.3 248 77.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.6e-90 335.9 247 77.3
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 5.8e-90 334.7 248 77.4
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 4.9e-89 331.6 247 76.5
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 4.8e-84 315.1 244 73.0
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.6e-63 245.4 258 58.9
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 4.6e-63 245.4 257 58.0
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 6.1e-63 245.0 247 60.3
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 2.3e-62 243.0 241 60.2
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.9e-62 242.3 258 63.2
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 3.9e-62 242.3 251 57.0
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 8.8e-62 241.1 257 57.6
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 8.8e-62 241.1 254 57.9
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 8.8e-62 241.1 258 62.8
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 8.8e-62 241.1 258 58.5
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.1e-61 240.7 247 60.3
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 2.0e-61 240.0 253 63.2
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 2.5e-61 239.6 258 58.5
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 3.3e-61 239.2 261 64.4
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 4.3e-61 238.8 256 55.5
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 7.4e-61 238.0 251 56.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-60 237.3 254 62.6
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.7e-60 236.9 269 56.1
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.7e-60 236.9 249 57.4
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.7e-60 236.9 252 58.3
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 2.8e-60 236.1 260 58.1
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 4.8e-60 235.3 257 56.4
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 6.3e-60 235.0 155 81.9
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 6.3e-60 235.0 259 56.8
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 6.3e-60 235.0 250 57.6
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.1e-59 234.2 257 55.3
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.4e-59 233.8 249 65.5
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.8e-59 233.4 252 62.7
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.8e-59 233.4 258 55.8
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 2.4e-59 233.0 252 57.1
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 3.1e-59 232.6 257 56.0
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 3.1e-59 232.6 254 57.9
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 4.1e-59 232.3 238 55.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.1e-59 232.3 253 55.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 4.1e-59 232.3 260 58.5
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 4.1e-59 232.3 257 54.5
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 4.1e-59 232.3 256 56.6
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 5.3e-59 231.9 252 56.0
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 6.9e-59 231.5 247 56.7
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 6.9e-59 231.5 253 62.8
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 9.1e-59 231.1 252 56.3
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.2e-58 230.7 257 56.0
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.2e-58 230.7 250 61.6
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.2e-58 230.7 245 56.3
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.5e-58 230.3 246 58.9
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 2.6e-58 229.6 252 56.7
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 2.6e-58 229.6 263 54.4
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 3.4e-58 229.2 257 55.3
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 5.9e-58 228.4 255 56.5
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 7.7e-58 228.0 240 58.3
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 7.7e-58 228.0 247 57.1
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.0e-57 227.6 254 54.3
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.7e-57 226.9 241 56.8
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 2.2e-57 226.5 242 64.5
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.2e-57 226.5 255 55.3
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 3.8e-57 225.7 256 58.6
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 5.0e-57 225.3 254 54.7
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 5.0e-57 225.3 257 60.7
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 6.5e-57 224.9 279 54.8
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.1e-56 224.2 249 60.6
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.4e-56 223.8 258 54.7
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.4e-56 223.8 248 56.9
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.9e-56 223.4 258 55.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.9e-56 223.4 242 54.5
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 2.5e-56 223.0 256 53.9
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.5e-56 221.9 287 50.2
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 5.5e-56 221.9 245 63.3
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.2e-56 221.5 257 54.1
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 7.2e-56 221.5 250 63.2
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.2e-55 220.7 257 53.7
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 2.1e-55 219.9 257 53.7
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.7e-55 219.5 257 53.3
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.7e-55 219.5 267 53.6
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.7e-55 219.5 234 56.0
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 4.7e-55 218.8 240 55.4
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 7.9e-55 218.0 255 52.9
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.9e-55 218.0 153 74.5
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 1.4e-54 217.2 154 77.3
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 3.9e-54 215.7 259 54.1
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 6.7e-54 214.9 292 49.3
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.7e-54 214.9 244 52.5
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 8.8e-54 214.5 258 53.1
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.1e-53 214.2 187 65.8
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.5e-53 213.8 259 60.2
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.6e-53 213.0 244 52.0
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 3.3e-53 212.6 259 53.7
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 7.4e-53 211.5 245 51.0
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.7e-52 210.3 240 55.8
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.3e-52 208.4 266 51.1
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.1e-51 207.6 171 69.6
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 7.0e-51 204.9 253 51.4
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 5.9e-50 201.8 255 51.4
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 3.8e-49 199.1 257 47.5
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 1.9e-48 196.8 225 53.8
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.2e-48 196.1 306 50.3
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 4.2e-48 195.7 255 51.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 3.6e-47 192.6 218 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.6e-45 186.4 187 56.1
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.8e-44 183.0 108 89.8
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 4.8e-44 182.2 249 49.8
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 4.1e-43 179.1 222 53.6
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 7.0e-43 178.3 223 49.8
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 9.1e-43 177.9 145 63.4
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 6.5e-41 171.8 244 59.0
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 7.2e-40 168.3 242 44.6
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 4.8e-36 155.6 179 52.5
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.1e-35 152.9 129 66.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 3.2e-32 142.9 96 76.0
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 6.8e-30 135.2 246 41.1
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 8.8e-30 134.8 218 44.5
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.2e-29 134.4 98 70.4
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 5.5e-24 115.5 270 46.7
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 6.1e-23 112.1 244 46.3
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 6.1e-23 112.1 244 46.3
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.4e-22 110.9 197 44.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.5e-21 107.5 123 49.6
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.6e-21 106.7 172 43.6
BraA10t43048Z Brassica rapa HOM05D005135 ORTHO05D005810 1.4e-19 100.9 246 43.5
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 5.4e-19 99.0 105 56.2
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 4.5e-18 95.9 203 41.9
A10p09670 Brassica napus HOM05D005135 ORTHO05D005810 5.9e-18 95.5 93 78.5
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.9e-17 93.2 184 41.8
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 4.3e-16 89.4 65 66.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.2e-15 87.8 156 42.9
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.0e-14 84.7 55 81.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.8e-14 84.0 55 76.4
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 5.8e-13 79.0 154 39.6
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 6.4e-12 75.5 54 72.2
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.6e-10 70.9 63 55.6
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.3e-09 67.0 174 32.2
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.6e-07 59.7 40 72.5
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 2.3e-06 57.0 86 44.2


User provided reference genes

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