Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1903.6 970 100.0
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1718.0 978 90.6
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1690.2 978 89.1
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1607.0 980 84.4
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1603.2 978 84.6
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1578.9 977 83.0
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1563.1 973 82.6
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1561.6 973 82.5
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1535.8 976 80.7
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1535.8 976 80.7
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1525.0 976 80.3
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1523.5 973 81.8
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1517.7 973 81.7
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1483.0 977 79.8
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1464.9 976 78.1
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1453.0 973 79.2
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 0.0e+00 1090.1 863 64.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 3.1e-291 1005.4 672 79.3
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 5.8e-282 974.5 977 54.0
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 1.2e-279 966.8 962 54.7
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 6.6e-278 961.1 1037 52.0
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 3.3e-277 958.7 1037 51.2
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 1.2e-274 950.3 1023 52.7
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 2.2e-273 946.0 1015 52.3
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 3.2e-272 942.2 1008 52.4
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 2.7e-271 939.1 965 53.6
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 3.5e-271 938.7 981 53.8
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 6.0e-271 937.9 934 53.4
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 6.0e-271 937.9 981 53.7
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 7.8e-271 937.6 1014 52.5
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 1.3e-270 936.8 1042 51.5
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.9e-269 932.9 943 54.3
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 1.6e-268 929.9 1039 50.9
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.6e-268 929.9 949 54.4
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.6e-268 929.9 982 51.9
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 4.8e-268 928.3 994 52.4
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 8.1e-268 927.5 1005 51.2
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 9.9e-266 920.6 1031 50.8
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 3.8e-265 918.7 955 53.6
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.4e-265 917.5 960 52.5
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 5.4e-264 914.8 950 52.5
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 7.1e-264 914.4 960 52.1
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.6e-263 913.3 960 53.5
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 2.1e-263 912.9 989 51.3
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.7e-263 912.5 960 52.3
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.3e-262 910.2 868 55.4
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 3.0e-262 909.1 941 52.8
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 3.9e-262 908.7 988 51.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 8.7e-262 907.5 1013 51.3
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 1.5e-261 906.7 971 52.4
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-261 906.4 960 51.8
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.5e-261 906.0 1014 50.5
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 3.3e-261 905.6 956 53.6
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 2.1e-260 902.9 1015 50.6
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 3.6e-260 902.1 989 51.3
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 4.8e-260 901.7 1043 49.6
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.1e-259 900.6 996 52.1
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 5.8e-258 894.8 918 53.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.3e-256 887.5 845 56.0
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.3e-254 882.9 928 53.1
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 5.1e-254 881.7 1002 49.2
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.9e-253 879.8 924 52.9
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 3.3e-253 879.0 963 50.2
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 3.7e-252 875.5 981 50.7
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 8.1e-252 874.4 1040 48.9
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 2.4e-251 872.8 876 52.9
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 5.3e-251 871.7 978 50.0
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 4.5e-250 868.6 969 49.3
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 7.6e-250 867.8 1052 49.0
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 3.2e-248 862.4 946 51.1
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 9.3e-248 860.9 883 51.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 7.9e-247 857.8 1024 49.6
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 1.0e-246 857.4 973 49.6
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 6.7e-246 854.7 968 48.5
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-245 853.2 1015 48.6
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.3e-244 850.5 987 48.9
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 3.7e-244 849.0 979 49.1
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 2.0e-242 843.2 957 50.3
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.2e-241 839.7 887 52.0
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 2.9e-241 839.3 943 50.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 4.2e-240 835.5 984 49.1
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.0e-238 830.9 970 50.3
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.1e-235 820.8 951 51.0
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 5.9e-234 815.1 857 51.2
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 1.1e-232 810.8 967 46.2
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 9.4e-232 807.7 847 51.0
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.2e-231 807.4 855 51.2
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 1.4e-230 803.9 858 51.0
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.1e-229 800.8 858 52.1
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 8.5e-225 784.6 1021 44.8
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 2.0e-221 773.5 971 45.0
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.7e-220 770.4 1021 45.4
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.8e-214 750.4 840 47.3
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.0e-213 746.9 711 56.0
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.7e-212 743.8 953 45.3
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.8e-212 743.0 973 46.1
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.0e-209 734.6 794 50.6
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.2e-205 721.1 798 48.9
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.2e-199 701.0 979 42.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.2e-197 694.5 772 49.1
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 1.5e-184 651.0 549 59.0
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.4e-182 644.4 537 59.4
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 9.8e-181 638.3 544 59.6
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.2e-179 633.3 598 52.7
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.4e-166 591.3 615 50.1
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 9.3e-155 552.0 405 67.4
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.0e-124 452.2 473 48.0
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 3.3e-120 437.2 394 56.9
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 8.5e-92 342.8 476 48.3
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.0e-73 280.8 512 38.9
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.7e-68 265.4 415 46.5
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.4e-56 224.2 301 41.9
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.1e-46 193.0 467 30.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.8e-45 186.8 467 29.6
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.8e-45 186.8 467 29.6
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.5e-43 181.8 380 31.3
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.6e-43 179.9 157 51.6
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.5e-35 156.0 482 28.2
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 3.3e-35 154.8 118 62.7
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 3.3e-35 154.8 118 62.7
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 8.4e-31 140.2 196 40.8
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.1e-29 135.6 318 29.9
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 1.1e-27 129.8 396 29.0
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.5e-21 108.2 484 27.1
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.8e-20 105.9 485 26.8
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.6e-13 81.3 150 32.7
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.3e-12 79.0 60 70.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 4.1e-09 68.2 119 31.1
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 2.0e-08 65.9 85 45.9
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.9e-07 62.0 350 23.7
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 6.5e-07 60.8 360 23.1
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 8.5e-07 60.5 194 24.7
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 1.9e-06 59.3 191 26.2
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.9e-06 59.3 191 26.2
Nn4g24804 Nelumbo nucifera HOM05D003725 ORTHO05D004294 1.9e-06 59.3 135 28.1
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 3.2e-06 58.5 110 31.8
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.2e-06 58.5 309 22.3
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 3.2e-06 58.5 78 34.6
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 3.2e-06 58.5 76 38.2
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 3.2e-06 58.5 72 37.5
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 3.2e-06 58.5 72 36.1
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 4.2e-06 58.2 72 37.5
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 4.2e-06 58.2 116 27.6
RcHm_v2.0_Chr5g0019411 Rosa chinensis HOM05D003725 ORTHO05D004294 4.2e-06 58.2 167 25.7
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 4.2e-06 58.2 72 34.7
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 4.2e-06 58.2 120 37.5
MBI08_g22598_MAGBIO Magnolia biondii HOM05D003725 ORTHO05D004294 5.5e-06 57.8 136 29.4
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 5.5e-06 57.8 84 34.5
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 7.2e-06 57.4 118 27.1
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 7.2e-06 57.4 72 37.5
Sabra01G0046500 Salix brachista HOM05D002537 ORTHO05D002751 7.2e-06 57.4 107 29.9
PGSC0003DMG400012915 Solanum tuberosum HOM05D003725 ORTHO05D004294 7.2e-06 57.4 88 34.1
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 9.3e-06 57.0 91 29.7
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 9.3e-06 57.0 119 29.4
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 9.3e-06 57.0 72 37.5


User provided reference genes

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