Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 1.0e-85 320.1 171 100.0
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 3.0e-85 318.5 171 99.4
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 3.1e-82 308.5 171 95.3
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 1.1e-79 300.1 169 94.1
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 6.1e-78 294.3 171 89.5
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 2.3e-77 292.4 171 89.5
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 3.0e-77 292.0 168 91.1
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.0e-69 266.9 169 84.6
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 7.5e-68 260.8 169 82.2
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 7.5e-68 260.8 169 82.2
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 7.5e-68 260.8 169 82.2
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 1.3e-67 260.0 201 72.6
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 2.2e-67 259.2 171 81.3
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 2.2e-67 259.2 171 81.3
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 5.6e-55 218.0 168 70.8
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 3.1e-37 159.1 174 55.2
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 1.7e-35 153.3 173 53.2
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 2.9e-35 152.5 174 52.9
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 3.8e-35 152.1 173 50.3
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.1e-34 150.6 173 50.9
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.4e-34 150.2 176 52.3
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 5.4e-34 148.3 173 49.1
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 7.1e-34 147.9 173 49.7
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 9.3e-34 147.5 173 51.4
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 1.2e-33 147.1 173 51.4
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.0e-32 144.1 176 50.6
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 3.9e-32 142.1 175 50.3
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 3.9e-32 142.1 171 48.5
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 6.6e-32 141.4 173 49.1
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 8.7e-32 141.0 173 49.1
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 1.1e-31 140.6 173 50.9
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 1.5e-31 140.2 175 48.6
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.9e-31 139.8 173 48.0
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 1.9e-31 139.8 172 46.5
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 3.3e-31 139.0 124 62.9
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 3.3e-31 139.0 171 47.4
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 4.3e-31 138.7 173 46.8
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 4.3e-31 138.7 164 51.2
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 1.3e-30 137.1 173 47.4
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 1.3e-30 137.1 172 48.8
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 2.8e-30 136.0 175 50.9
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 3.6e-30 135.6 183 45.9
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 1.4e-29 133.7 173 48.0
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 2.4e-29 132.9 175 46.3
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.4e-29 132.9 173 44.5
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 4.0e-29 132.1 174 44.3
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 6.9e-29 131.3 173 44.5
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 2.6e-28 129.4 172 44.2
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 3.4e-28 129.0 173 43.4
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 4.5e-28 128.6 173 43.4
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 5.8e-28 128.3 171 43.9
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 5.8e-28 128.3 173 46.2
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 7.6e-28 127.9 175 45.1
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 7.6e-28 127.9 173 42.8
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 9.9e-28 127.5 173 45.7
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 2.2e-27 126.3 173 47.4
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 2.9e-27 125.9 178 45.5
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 3.8e-27 125.6 173 43.9
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 4.9e-27 125.2 173 43.4
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 6.4e-27 124.8 175 45.7
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 6.4e-27 124.8 171 43.3
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 8.4e-27 124.4 173 42.8
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 1.1e-26 124.0 175 42.3
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 1.4e-26 123.6 173 42.8
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 3.2e-26 122.5 164 43.3
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 3.2e-26 122.5 170 42.9
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 7.1e-26 121.3 164 42.7
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 9.3e-26 120.9 171 42.7
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.6e-25 120.2 175 41.1
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 2.1e-25 119.8 175 41.1
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 6.0e-25 118.2 173 44.5
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 6.0e-25 118.2 173 44.5
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.3e-24 117.1 173 43.9
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 5.1e-24 115.2 166 45.8
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 1.1e-23 114.0 175 39.4
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.9e-23 113.2 123 48.0
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 1.9e-23 113.2 178 42.1
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 2.5e-23 112.8 181 40.9
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 4.3e-23 112.1 181 42.5
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 3.7e-22 109.0 181 42.5
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 4.8e-22 108.6 173 41.0
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.1e-21 107.5 183 40.4
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 1.4e-21 107.1 181 38.1
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 1.4e-21 107.1 180 40.6
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 1.8e-21 106.7 112 51.8
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 3.1e-21 105.9 185 39.5
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 3.1e-21 105.9 182 40.1
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 4.0e-21 105.5 180 40.0
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 1.2e-20 104.0 123 45.5
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 1.2e-20 104.0 147 43.5
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 1.2e-20 104.0 169 42.6
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 3.4e-20 102.4 109 51.4
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 2.2e-19 99.8 181 39.2
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 3.8e-19 99.0 174 40.2
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 8.4e-19 97.8 140 47.9
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 5.5e-18 95.1 173 36.4
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.6e-17 93.6 121 43.0
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 2.1e-17 93.2 110 47.3
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 7.9e-17 91.3 173 41.0
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 2.9e-11 72.8 86 46.5
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 2.9e-11 72.8 172 33.1
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 6.5e-11 71.6 145 31.7
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 4.2e-10 68.9 47 74.5
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 4.2e-10 68.9 137 36.5
Aqoxy3G03161 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 4.6e-09 65.5 147 32.0
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 4.6e-09 65.5 112 34.8
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 7.9e-09 64.7 77 45.5
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 3.0e-08 62.8 190 31.6
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 3.0e-08 62.8 104 35.6
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 1.1e-07 60.8 173 31.2
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 1.1e-07 60.8 173 31.2
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 1.5e-07 60.5 114 32.5
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 1.9e-07 60.1 126 31.0
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 9.7e-07 57.8 165 30.3
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 3.7e-06 55.8 144 33.3


User provided reference genes

Program Settings